Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KU515_RS03660 Genome accession   NZ_CP077932
Coordinates   717493..718365 (+) Length   290 a.a.
NCBI ID   WP_225798457.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 194     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 712493..723365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU515_RS03640 (KU515_03630) sucC 712606..713772 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  KU515_RS03645 (KU515_03635) sucD 713794..714702 (+) 909 WP_000110245.1 succinate--CoA ligase subunit alpha -
  KU515_RS03650 (KU515_03640) - 714931..716049 (+) 1119 WP_001041652.1 LysM peptidoglycan-binding domain-containing protein -
  KU515_RS03655 (KU515_03645) fmhC 716077..717321 (+) 1245 WP_000672866.1 FemA/FemB family glycyltransferase FmhC -
  KU515_RS03660 (KU515_03650) dprA 717493..718365 (+) 873 WP_225798457.1 DNA-processing protein DprA Machinery gene
  KU515_RS03665 (KU515_03655) topA 718539..720614 (+) 2076 WP_001622395.1 type I DNA topoisomerase -
  KU515_RS03670 (KU515_03660) trmFO 720770..722077 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33550.02 Da        Isoelectric Point: 9.6905

>NTDB_id=511806 KU515_RS03660 WP_225798457.1 717493..718365(+) (dprA) [Staphylococcus aureus strain 194]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLNHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLLTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=511806 KU515_RS03660 WP_225798457.1 717493..718365(+) (dprA) [Staphylococcus aureus strain 194]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTAATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGAAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCTTACAATAGCAGTTTTAGCCTTTGGCCATCAAACGCATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979