Detailed information NTG0051169

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SIR_RS19405
• Genome accession: NC_022246
• Coordinates: 1979334..1980431 (+)
• Length: 365 a.a.
• NCBI ID: WP_021003369.1
• Uniprot ID: T1ZHB6
• Organism: Streptococcus intermedius B196
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1974334..1985431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIR_RS19380 (SIR_1884)	pgsA	1974813..1975352 (-)	540	WP_003077406.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SIR_RS19385 (SIR_1885)	rodZ	1975363..1976175 (-)	813	WP_021003365.1	cytoskeleton protein RodZ	-
SIR_RS19390 (SIR_1886)	yfmH	1976234..1977529 (-)	1296	WP_021003366.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SIR_RS19395 (SIR_1887)	yfmF	1977529..1978776 (-)	1248	WP_021003367.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SIR_RS19400 (SIR_1888)	yaaA	1978952..1979332 (+)	381	WP_021003368.1	S4 domain-containing protein YaaA	-
SIR_RS19405 (SIR_1889)	recF	1979334..1980431 (+)	1098	WP_021003369.1	DNA replication/repair protein RecF	Machinery gene
SIR_RS19410 (SIR_1890)	guaB	1981273..1982754 (-)	1482	WP_021003370.1	IMP dehydrogenase	-
SIR_RS19415 (SIR_1891)	trpS	1982892..1983917 (-)	1026	WP_021003371.1	tryptophan--tRNA ligase	-
SIR_RS19420 (SIR_1892)	galE	1983999..1984994 (-)	996	WP_021003372.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42130.46 Da
• Isoelectric Point: 8.8028

>NTDB_id=51169 SIR_RS19405 WP_021003369.1 1979334..1980431(+) (recF) [Streptococcus intermedius B196]
MWLKNLQIQYFRNYKLTEIDFHPGLNIFLGENAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSNDSLKISGQLAKETGN
ISLEIDLTPKGRTTKVNHLKQSKLSDYVGNMNVVLFAPEDLQLIKGTPALRRKFIDIELGQIKPIYLSDLSQYHHVLKQR
NAYLKAAKKIDETFLTVLDDQLVEFGCRVMQHRTEFLKKLEHFGQQKHLELSSNLENLTIKYCSSIPLSDPNKLKESFQI
ALRQSRSRDLFKKNTGIGPHRDDIAFYINNMNATFGSQGQHRSMVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLETISQNIQTFITTTTLEHLKHLPSDIKIFSIHDGHFMENQV

Nucleotide

• Length: 1098 bp

>NTDB_id=51169 SIR_RS19405 WP_021003369.1 1979334..1980431(+) (recF) [Streptococcus intermedius B196]
ATGTGGTTAAAAAACTTACAAATTCAATATTTTCGCAATTATAAATTAACTGAAATAGATTTTCACCCTGGTCTCAATAT
TTTTTTAGGGGAAAACGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCGTTGACACGAAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAACGATTCTTTAAAAATTTCTGGACAACTTGCCAAAGAAACTGGGAAT
ATCTCTTTAGAAATTGACTTGACCCCTAAAGGAAGAACTACAAAGGTTAATCATTTAAAACAAAGTAAATTATCCGATTA
TGTTGGAAATATGAATGTTGTTCTATTTGCTCCAGAAGATTTACAACTGATTAAAGGGACACCAGCTCTTAGACGGAAAT
TTATCGACATAGAATTAGGGCAAATTAAACCAATCTATTTATCTGATTTATCACAATATCATCATGTTTTAAAACAACGA
AATGCTTATCTAAAGGCAGCAAAAAAAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGCTAGTAGAGTTTGGTTG
CCGTGTTATGCAACATCGAACAGAGTTTCTCAAAAAACTAGAACACTTTGGTCAACAAAAACATTTAGAGCTTTCAAGTA
ATTTAGAAAACTTAACCATTAAGTATTGCTCTTCTATTCCACTTTCAGATCCCAATAAATTGAAAGAATCTTTCCAAATT
GCATTAAGACAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAATTGGTCCTCATCGAGATGATATCGCTTTTTA
TATTAATAACATGAATGCCACTTTTGGCAGTCAAGGACAACATCGAAGTATGGTCCTATCTCTTAAGTTGGCAGAGATTG
AACTTATGGAAACTGTGACCAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGCGAACTTGACAACAATCGTCAA
TTGAATTTGCTTGAAACTATCTCTCAAAATATACAAACATTTATCACAACAACAACTTTAGAACATCTGAAACATTTGCC
TTCTGATATTAAAATTTTCTCAATTCATGATGGACATTTTATGGAAAATCAAGTGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-356)

3D structure

• AlphaFold DB: T1ZHB6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	72.626	98.082	0.712
recF	Bacillus subtilis subsp. subtilis str. 168	47.443	96.438	0.458