Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KU511_RS11255 Genome accession   NZ_CP077928
Coordinates   2255964..2257076 (-) Length   370 a.a.
NCBI ID   WP_000775116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250964..2262076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU511_RS11245 (KU511_11205) gyrA 2251320..2253983 (-) 2664 WP_000819075.1 DNA gyrase subunit A -
  KU511_RS11250 (KU511_11210) gyrB 2254020..2255954 (-) 1935 WP_000255583.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KU511_RS11255 (KU511_11215) recF 2255964..2257076 (-) 1113 WP_000775116.1 DNA replication/repair protein RecF Machinery gene
  KU511_RS11260 (KU511_11220) yaaA 2257073..2257318 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  KU511_RS11265 (KU511_11225) dnaN 2257700..2258833 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  KU511_RS11270 (KU511_11230) dnaA 2259111..2260472 (-) 1362 WP_001290430.1 chromosomal replication initiator protein DnaA -
  KU511_RS11275 (KU511_11235) rpmH 2261203..2261340 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  KU511_RS11280 (KU511_11240) rnpA 2261461..2261814 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42445.46 Da        Isoelectric Point: 6.4362

>NTDB_id=511682 KU511_RS11255 WP_000775116.1 2255964..2257076(-) (recF) [Staphylococcus aureus strain 196]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEATR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=511682 KU511_RS11255 WP_000775116.1 2255964..2257076(-) (recF) [Staphylococcus aureus strain 196]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCGAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGACACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACAGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497