Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IQE12_RS11020 Genome accession   NZ_CP065515
Coordinates   2226145..2226540 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain GDY8P96A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2221145..2231540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE12_RS10995 (IQE12_10995) thiE 2221607..2222248 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  IQE12_RS11000 (IQE12_11000) thiM 2222241..2223041 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  IQE12_RS11005 (IQE12_11005) thiD 2223025..2223855 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IQE12_RS11010 (IQE12_11010) tenA 2223848..2224537 (-) 690 WP_000396077.1 thiaminase II -
  IQE12_RS11015 (IQE12_11015) sceD 2225061..2225756 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  IQE12_RS11020 (IQE12_11020) ssb 2226145..2226540 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  IQE12_RS11025 (IQE12_11025) - 2226734..2227174 (+) 441 WP_000846746.1 YwpF-like family protein -
  IQE12_RS11030 (IQE12_11030) fabZ 2227232..2227672 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IQE12_RS11035 (IQE12_11035) murA 2227706..2228971 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IQE12_RS11040 (IQE12_11040) - 2229082..2229315 (-) 234 WP_000384523.1 DUF1146 family protein -
  IQE12_RS11045 (IQE12_11045) - 2229447..2229539 (-) 93 WP_031864518.1 hypothetical protein -
  IQE12_RS11050 (IQE12_11050) - 2229877..2230281 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=511567 IQE12_RS11020 WP_000932692.1 2226145..2226540(-) (ssb) [Staphylococcus aureus strain GDY8P96A]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=511567 IQE12_RS11020 WP_000932692.1 2226145..2226540(-) (ssb) [Staphylococcus aureus strain GDY8P96A]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992