Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   IQE12_RS08300 Genome accession   NZ_CP065515
Coordinates   1699171..1700145 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain GDY8P96A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694171..1705145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE12_RS08260 (IQE12_08260) gcvT 1694672..1695763 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IQE12_RS08265 (IQE12_08265) - 1695922..1696446 (-) 525 WP_001015121.1 shikimate kinase -
  IQE12_RS08270 (IQE12_08270) - 1696436..1696582 (-) 147 WP_001789879.1 hypothetical protein -
  IQE12_RS08275 (IQE12_08275) - 1696679..1697176 (-) 498 Protein_1643 competence type IV pilus minor pilin ComGF -
  IQE12_RS08280 (IQE12_08280) comGE 1697094..1697393 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IQE12_RS08285 (IQE12_08285) comGD 1697380..1697826 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IQE12_RS08290 (IQE12_08290) comGC 1697804..1698115 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IQE12_RS08295 (IQE12_08295) comGB 1698129..1699199 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IQE12_RS08300 (IQE12_08300) comGA 1699171..1700145 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IQE12_RS08305 (IQE12_08305) - 1700197..1700820 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  IQE12_RS08310 (IQE12_08310) - 1700817..1701146 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IQE12_RS08315 (IQE12_08315) - 1701146..1702132 (-) 987 WP_000161314.1 ROK family glucokinase -
  IQE12_RS08320 (IQE12_08320) - 1702129..1702332 (-) 204 WP_000087561.1 YqgQ family protein -
  IQE12_RS08325 (IQE12_08325) - 1702313..1703776 (-) 1464 WP_001017865.1 rhomboid family protein -
  IQE12_RS08330 (IQE12_08330) - 1703788..1704327 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  IQE12_RS08335 (IQE12_08335) rpmG 1704536..1704685 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=511553 IQE12_RS08300 WP_000697220.1 1699171..1700145(-) (comGA) [Staphylococcus aureus strain GDY8P96A]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=511553 IQE12_RS08300 WP_000697220.1 1699171..1700145(-) (comGA) [Staphylococcus aureus strain GDY8P96A]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAAAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1