Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   IQE12_RS00485 Genome accession   NZ_CP065515
Coordinates   96636..98264 (-) Length   542 a.a.
NCBI ID   WP_181187900.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GDY8P96A     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 91636..103264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE12_RS14270 - 92837..93397 (+) 561 Protein_86 GntR family transcriptional regulator -
  IQE12_RS14425 - 93440..93787 (+) 348 Protein_87 HTH domain-containing protein -
  IQE12_RS00455 (IQE12_00455) - 93889..94110 (+) 222 WP_181187895.1 IS3 family transposase -
  IQE12_RS00460 (IQE12_00460) - 94094..94324 (+) 231 WP_181187896.1 hypothetical protein -
  IQE12_RS00465 (IQE12_00465) - 94674..94881 (-) 208 Protein_90 hypothetical protein -
  IQE12_RS00470 (IQE12_00470) - 94883..95404 (-) 522 WP_197668988.1 DUF1643 domain-containing protein -
  IQE12_RS00475 (IQE12_00475) - 95424..95732 (-) 309 WP_181187898.1 DUF960 family protein -
  IQE12_RS00480 (IQE12_00480) - 95817..96167 (-) 351 WP_181187899.1 SAUGI family uracil-DNA glycosylase inhibitor -
  IQE12_RS00485 (IQE12_00485) ccrB 96636..98264 (-) 1629 WP_181187900.1 cassette chromosome recombinase CcrB Machinery gene
  IQE12_RS00490 (IQE12_00490) ccrA 98286..99635 (-) 1350 WP_181187901.1 cassette chromosome recombinase CcrA Machinery gene
  IQE12_RS00495 (IQE12_00495) cch1 99814..101607 (-) 1794 WP_181187902.1 cassette chromosome replicative helicase -
  IQE12_RS00500 (IQE12_00500) ssb 101607..101897 (-) 291 WP_181187903.1 cassette chromosome ssDNA-binding protein -
  IQE12_RS00505 (IQE12_00505) - 102348..103262 (-) 915 WP_197668989.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62633.61 Da        Isoelectric Point: 9.6699

>NTDB_id=511531 IQE12_RS00485 WP_181187900.1 96636..98264(-) (ccrB) [Staphylococcus aureus strain GDY8P96A]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQVLEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQYD
EIHAKLDNLIKTIEDNPDLTTILKETIHKYKTQLTDITNQINQLKQQQNQEKTSYDTKQISAILRRIFQNVESMDKSQLK
ALYLTVIDRIDIRKDINHKKRFYVTLKLNDEIIKQLFNNIPIDEVLLSTSSLFLPQTIYLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=511531 IQE12_RS00485 WP_181187900.1 96636..98264(-) (ccrB) [Staphylococcus aureus strain GDY8P96A]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTACGTGTATCAACAGAAATGCAAAGTACAGAAGGTTATAGTAT
TGATGGCCAAATCAATCAGATTAGAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGACGCGAATGAAGGTCATATCGATTGCGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAGAACGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTCGCAAGCTTCTCTG
AATTCGAACGCAATAACATTGTAGAAAATGTCTTCATGGGTCAAACCAGACGTGCTCAAGAAGGCTATTATCAAGGGAAT
TTACCACTAGGATATGATAAAATACCGGATAGTAAACATGAACTCATGATAAACCAGCATGAAGCGAATATCGTCAAATA
TATATTTGAATCATATGCTAAAGGTCATGGATATCGCAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAATCCTTTTTACATTGGTAAAATACAATTTGCGAAA
TATAAGGATTGGAATGAAAAACGACGTAAAGGCCTTAATGACAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGACGTGATTGAGAAATACGTTATGGATCAAGTACTCGAAATTGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATCGCTTATAAACAACAACAATACGAT
GAAATCCATGCGAAACTAGACAACTTGATTAAAACCATTGAAGATAATCCAGACTTAACAACAATACTCAAAGAAACAAT
CCATAAATATAAAACACAACTGACTGACATTACGAATCAAATTAATCAACTTAAACAACAACAAAATCAAGAGAAAACAT
CATATGATACTAAACAAATATCTGCTATTTTACGTCGCATATTTCAAAACGTAGAATCAATGGATAAGTCACAACTCAAA
GCATTATATCTCACAGTCATTGACCGAATCGATATTCGTAAAGATATTAATCATAAGAAACGCTTTTATGTCACACTCAA
GCTTAATGATGAAATTATCAAACAACTTTTCAATAATATCCCTATCGACGAAGTGCTACTCAGCACTTCGTCTTTATTTT
TACCTCAAACTATTTATCTTCAAATTTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.24

100

0.852