Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   IRB79_RS08585 Genome accession   NZ_CP065511
Coordinates   1660070..1660264 (+) Length   64 a.a.
NCBI ID   WP_243508086.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655070..1665264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS08565 (IRB79_08545) - 1656910..1657101 (-) 192 WP_206835273.1 YjzD family protein -
  IRB79_RS08570 (IRB79_08550) - 1657316..1658053 (+) 738 WP_243508083.1 hydrolase -
  IRB79_RS08575 (IRB79_08555) - 1658136..1658966 (+) 831 WP_243508084.1 hypothetical protein -
  IRB79_RS08580 (IRB79_08560) med 1659085..1660047 (+) 963 WP_243508085.1 BMP family ABC transporter substrate-binding protein Regulator
  IRB79_RS08585 (IRB79_08565) comZ 1660070..1660264 (+) 195 WP_243508086.1 ComZ family protein Regulator
  IRB79_RS08590 - 1660938..1661279 (+) 342 WP_243508087.1 nuclease-related domain-containing protein -
  IRB79_RS08595 (IRB79_08575) - 1661892..1662278 (-) 387 WP_243508088.1 hypothetical protein -
  IRB79_RS08600 (IRB79_08580) - 1662492..1663424 (+) 933 WP_243508089.1 beta-ketoacyl-ACP synthase III -
  IRB79_RS08605 (IRB79_08585) fabF 1663473..1664711 (+) 1239 WP_243508090.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 64 a.a.        Molecular weight: 7467.64 Da        Isoelectric Point: 3.9646

>NTDB_id=511482 IRB79_RS08585 WP_243508086.1 1660070..1660264(+) (comZ) [Cytobacillus oceanisediminis strain N497-ZHONG]
MQLNEKNMEFMQIAMKYLPEAKQQLDEAGIELSMEMIQPFMNLFTKVMNEAYEMGKADALNESE

Nucleotide


Download         Length: 195 bp        

>NTDB_id=511482 IRB79_RS08585 WP_243508086.1 1660070..1660264(+) (comZ) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGCAGCTAAACGAAAAAAACATGGAATTCATGCAAATCGCCATGAAATATCTGCCAGAAGCCAAACAGCAGCTCGACGA
AGCAGGCATTGAACTATCCATGGAAATGATCCAGCCATTCATGAACCTATTCACCAAAGTCATGAACGAAGCCTACGAAA
TGGGCAAAGCGGATGCTTTGAATGAGAGTGAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

73.77

95.313

0.703