Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IRB79_RS08580 Genome accession   NZ_CP065511
Coordinates   1659085..1660047 (+) Length   320 a.a.
NCBI ID   WP_243508085.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654085..1665047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS08560 (IRB79_08540) clpB 1654242..1656839 (+) 2598 WP_243508082.1 ATP-dependent chaperone ClpB -
  IRB79_RS08565 (IRB79_08545) - 1656910..1657101 (-) 192 WP_206835273.1 YjzD family protein -
  IRB79_RS08570 (IRB79_08550) - 1657316..1658053 (+) 738 WP_243508083.1 hydrolase -
  IRB79_RS08575 (IRB79_08555) - 1658136..1658966 (+) 831 WP_243508084.1 hypothetical protein -
  IRB79_RS08580 (IRB79_08560) med 1659085..1660047 (+) 963 WP_243508085.1 BMP family ABC transporter substrate-binding protein Regulator
  IRB79_RS08585 (IRB79_08565) comZ 1660070..1660264 (+) 195 WP_243508086.1 ComZ family protein Regulator
  IRB79_RS08590 - 1660938..1661279 (+) 342 WP_243508087.1 nuclease-related domain-containing protein -
  IRB79_RS08595 (IRB79_08575) - 1661892..1662278 (-) 387 WP_243508088.1 hypothetical protein -
  IRB79_RS08600 (IRB79_08580) - 1662492..1663424 (+) 933 WP_243508089.1 beta-ketoacyl-ACP synthase III -
  IRB79_RS08605 (IRB79_08585) fabF 1663473..1664711 (+) 1239 WP_243508090.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35671.36 Da        Isoelectric Point: 4.4822

>NTDB_id=511481 IRB79_RS08580 WP_243508085.1 1659085..1660047(+) (med) [Cytobacillus oceanisediminis strain N497-ZHONG]
MHKTLVKFGILLLCLLLLASCGQAMSTGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYNVEVYYKEGMNSEMVVERA
VKELDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNDNTTSLNFEAYAMGFFGGMVAGHMTKTNNIGILAAF
EWQPEVEGFYQGVSQIDERINVQIQYVGNWDNDNKAIALLEKMIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTVQHVDVLYELVAEKFNEGELESGNLTFDFEDEVISLGKFSPDVDEEFKKELNAAIENYKKTGKLPTKN

Nucleotide


Download         Length: 963 bp        

>NTDB_id=511481 IRB79_RS08580 WP_243508085.1 1659085..1660047(+) (med) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGCATAAGACATTAGTGAAATTCGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCGGACAAGCGATGTCTAC
AGGAAAACTTGAAAAAGCTGGATTATTAGTGCCCGATACCGTCAATGATCAGGTATGGGGGACCAAAGGCTATAAAGGCA
TGTTAAAGATTCAATCCCATTATAATGTTGAGGTTTATTATAAAGAGGGCATGAATTCTGAGATGGTTGTTGAAAGAGCT
GTTAAAGAGTTAGATCAAAAAGGTGTAAACCTGATTTTTGGACATGGCAATGAATACGCGGCATACTTTAATAACATTTC
TAAAAAATACCCTGACATTCATTTTGTCAGCTTTAATGGCGATGCCCAAAATGACAACACCACCAGCTTGAATTTTGAAG
CCTATGCAATGGGATTCTTTGGCGGCATGGTTGCTGGTCATATGACGAAAACCAATAATATAGGAATACTCGCAGCTTTT
GAATGGCAGCCGGAGGTAGAAGGTTTTTATCAAGGTGTAAGCCAAATTGATGAAAGAATAAATGTGCAAATTCAATATGT
CGGCAACTGGGACAATGATAATAAAGCCATAGCTCTCTTGGAAAAAATGATTGCCAATAAGACAGATGTTGTCTATCCAG
CTGGAGATGGGTATAATGTTCCTGTCATCGAGAAACTAAAAGAAGAAGGGCTCTACGCCATCGGTTATATTTCCGACCAG
TCTGATCTGGGTGAATCAGTTGTGCTGACCAGTACTGTTCAGCATGTCGATGTTTTGTATGAACTAGTTGCAGAAAAATT
CAACGAAGGCGAACTGGAGTCAGGAAATTTAACTTTCGATTTCGAGGATGAAGTTATTTCACTGGGAAAATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCCGCCATTGAGAATTACAAAAAAACAGGCAAACTGCCCACCAAGAAT
TGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.035

97.813

0.519