Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IQ781_RS21425 Genome accession   NZ_CP065509
Coordinates   4220249..4220995 (+) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus sp. N447-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4215249..4225995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ781_RS21395 (IQ781_21345) - 4215538..4217682 (+) 2145 WP_000091510.1 HD family phosphohydrolase -
  IQ781_RS21400 (IQ781_21350) ybeY 4217679..4218149 (+) 471 WP_001050397.1 rRNA maturation RNase YbeY -
  IQ781_RS21405 (IQ781_21355) - 4218146..4218499 (+) 354 WP_000715464.1 diacylglycerol kinase family protein -
  IQ781_RS21410 (IQ781_21360) - 4218599..4218997 (+) 399 WP_001086283.1 cytidine deaminase -
  IQ781_RS21415 (IQ781_21365) era 4218990..4219895 (+) 906 WP_001080230.1 GTPase Era -
  IQ781_RS21420 (IQ781_21370) - 4220072..4220215 (+) 144 WP_000883924.1 YqzL family protein -
  IQ781_RS21425 (IQ781_21375) recO 4220249..4220995 (+) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  IQ781_RS21430 (IQ781_21380) - 4221103..4221735 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  IQ781_RS21435 (IQ781_21385) - 4221765..4222577 (+) 813 WP_000368936.1 pyruvate, water dikinase regulatory protein -
  IQ781_RS21440 (IQ781_21390) - 4223213..4223356 (+) 144 WP_000479733.1 hypothetical protein -
  IQ781_RS21445 (IQ781_21395) dnaG 4223438..4225234 (+) 1797 WP_000528221.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=511451 IQ781_RS21425 WP_000487009.1 4220249..4220995(+) (recO) [Bacillus sp. N447-1]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=511451 IQ781_RS21425 WP_000487009.1 4220249..4220995(+) (recO) [Bacillus sp. N447-1]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552