Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SPAF_RS06580 Genome accession   NC_017905
Coordinates   1305979..1307964 (-) Length   661 a.a.
NCBI ID   WP_003018146.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300979..1312964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS06570 (Spaf_1297) argH 1302910..1304295 (-) 1386 WP_228380349.1 argininosuccinate lyase -
  SPAF_RS06575 (Spaf_1299) - 1304308..1305507 (-) 1200 WP_014713513.1 argininosuccinate synthase -
  SPAF_RS06580 (Spaf_1301) amiA 1305979..1307964 (-) 1986 WP_003018146.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS06585 (Spaf_1302) - 1308088..1309125 (-) 1038 WP_014713514.1 M42 family metallopeptidase -
  SPAF_RS06590 (Spaf_1303) - 1309212..1309589 (-) 378 WP_041826362.1 hypothetical protein -
  SPAF_RS06595 (Spaf_igr1303) - 1309606..1310082 (-) 477 WP_041826363.1 hypothetical protein -
  SPAF_RS06600 (Spaf_1305) - 1310492..1310875 (-) 384 WP_014713517.1 hypothetical protein -
  SPAF_RS06605 (Spaf_1306) - 1310971..1311402 (-) 432 WP_014713518.1 hypothetical protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73556.16 Da        Isoelectric Point: 5.3203

>NTDB_id=51138 SPAF_RS06580 WP_003018146.1 1305979..1307964(-) (amiA) [Streptococcus parasanguinis FW213]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFITGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESYWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYISDVKLEFYDGQDQSKLAKSFGENALSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQADGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRTQSFKQSVEEALGKENVVIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVIPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTTADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=51138 SPAF_RS06580 WP_003018146.1 1305979..1307964(-) (amiA) [Streptococcus parasanguinis FW213]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCCCTCCTTTCAGCAGGTATCCTAGCCGCTTGTTCGGGTGGTTC
TAAATCATCTAGCTCAAGCAACGGTCAAAAATTCTCATATGTCTATGAGACTGAGCCAGAAAACCTAAACTATATCACAT
CTGGTAAAGCAGCAACCCACGATATCACAGGAAACTTGATTGATGGTTTGTTTGAAAATGACAAATACGGTAACTTGATT
CCATCTCTTGCAAAAGACTGGACAGTTTCGCAAGATGGCTTGACTTATACTTATAAACTTCGTGATGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTAACAGCTAAAGATTTCATCACAGGGATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGTGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCTTACTGGAACTCTAAATTGAC
TCTTGGGATCACTTTCCCTGTCAACGAAAAATTTGTGAAATCAAAAGGGGATAAATTCGCTCAAGCAAGTGATACTAGCT
CCCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTTACTTCAAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACATCTCAGATGTGAAATTGGAATTCTACGATGGACAAGACCAAAGTAAATTGGCTAAATC
ATTCGGAGAAAATGCTCTTAGCTTGGCAAAACTCTTCCCAACTGGATCTGGATACTCAGAGCAAGCTAAAGAATTTAAAG
ACGAAATCACCTACACTCCTCAAGACGCAGCTTCTTATGTTATTGGTACCAACATCGACCGTCAATCTTACAAACACACT
GCTAAGAAGACCGATGAGGAAAAACAATCTACTAAGAAAGCTCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAACCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTGATGGTAAGACCTTCGGTGAAATGGTGAAAACTCAATTGGATACCTACGGAGATGAGTGGAAA
TCTACCAAACTAGACGATGGTCAAAACGGTCTCTTCGATGCTAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTGGACCAAACCACTCCATCAAGAGTTCAACGGA
CGCAATCTTTCAAACAATCAGTTGAAGAAGCGCTTGGTAAAGAAAATGTTGTCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTTTTTGCACCAAATGCGGCTGGCGAAGACTGGGATCTCTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGACCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTCAACAAACGCTACGAAAAATATGCGGCAGCGCAAGCTTGGTTGACAGATAGCGCCCTTGTTATTCCAAC
TTCTTCATCAACGGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGACAAAGCTGTGACAACTGCTGACTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAACAAAAAAGCACAAGAAGATCTTAAGAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.251

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

56.949

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

56.647

100

0.567

Multiple sequence alignment