Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SIR_RS17365 Genome accession   NC_022246
Coordinates   1571409..1571867 (-) Length   152 a.a.
NCBI ID   WP_020999090.1    Uniprot ID   T1ZG79
Organism   Streptococcus intermedius B196     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566409..1576867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17350 (SIR_1496) - 1567402..1567815 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SIR_RS17355 (SIR_1497) rcrQ 1567900..1569660 (-) 1761 WP_021003160.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17360 (SIR_1498) rcrP 1569650..1571416 (-) 1767 WP_021003161.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17365 (SIR_1499) rcrR 1571409..1571867 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SIR_RS17370 (SIR_1500) - 1572039..1573226 (-) 1188 WP_020999091.1 NADH-dependent flavin oxidoreductase -
  SIR_RS17375 (SIR_1501) - 1573493..1573903 (-) 411 WP_021003162.1 peptide deformylase -
  SIR_RS17380 (SIR_1502) scrK 1573969..1574868 (-) 900 WP_003074417.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17782.80 Da        Isoelectric Point: 9.5065

>NTDB_id=51138 SIR_RS17365 WP_020999090.1 1571409..1571867(-) (rcrR) [Streptococcus intermedius B196]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRNFFDEMDRCLLTGISEEDLMTFFQIMGRFYQNIEKLEKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=51138 SIR_RS17365 WP_020999090.1 1571409..1571867(-) (rcrR) [Streptococcus intermedius B196]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCCAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCACCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAACTTAATGAAGCGAATGGTTAAAAATGGCCTG
ATTTATCTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCAGAATCAAAAGAGCGCATGAATAA
AATTCGGAATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGATGACTTTTTTTCAAA
TAATGGGGCGATTTTACCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZG79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.466

96.053

0.408

Multiple sequence alignment