Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SPAF_RS05835 Genome accession   NC_017905
Coordinates   1152913..1154145 (-) Length   410 a.a.
NCBI ID   WP_003001797.1    Uniprot ID   V8BGN3
Organism   Streptococcus parasanguinis FW213     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1147913..1159145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS05800 (Spaf_1138) - 1148156..1148935 (-) 780 WP_014713390.1 replication initiator protein A -
  SPAF_RS11025 (Spaf_1139) - 1148932..1149105 (-) 174 WP_078934346.1 hypothetical protein -
  SPAF_RS05810 (Spaf_1140) rplL 1149307..1149675 (-) 369 WP_003016256.1 50S ribosomal protein L7/L12 -
  SPAF_RS05815 (Spaf_1141) rplJ 1149750..1150250 (-) 501 WP_003016269.1 50S ribosomal protein L10 -
  SPAF_RS05820 (Spaf_1142) - 1150485..1151282 (-) 798 WP_003016373.1 formate/nitrite transporter family protein -
  SPAF_RS05825 (Spaf_1143) - 1151448..1152149 (-) 702 WP_041826328.1 glucosaminidase domain-containing protein -
  SPAF_RS05830 (Spaf_1144) yihA 1152299..1152901 (-) 603 WP_003016353.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SPAF_RS05835 (Spaf_1145) clpX 1152913..1154145 (-) 1233 WP_003001797.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SPAF_RS05845 (Spaf_1147) - 1154354..1154863 (-) 510 WP_014713395.1 dihydrofolate reductase -
  SPAF_RS05850 (Spaf_1148) - 1155071..1155910 (-) 840 WP_041826329.1 thymidylate synthase -
  SPAF_RS05855 (Spaf_1149) - 1156004..1156963 (-) 960 WP_014713397.1 ROK family glucokinase -
  SPAF_RS05860 (Spaf_1150) - 1157049..1157567 (-) 519 WP_003016328.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45663.16 Da        Isoelectric Point: 4.3940

>NTDB_id=51137 SPAF_RS05835 WP_003001797.1 1152913..1154145(-) (clpX) [Streptococcus parasanguinis FW213]
MPTNQNNDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREDETDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEIPSQEDVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=51137 SPAF_RS05835 WP_003001797.1 1152913..1154145(-) (clpX) [Streptococcus parasanguinis FW213]
ATGCCAACGAATCAAAATAATGATATGATGGTTTATTGTTCATTTTGCGGAAAGAGTCAAGATGAAGTCCAAAAAATCAT
TGCAGGAAACAATGCGTTTATCTGTAATGAGTGTGTAGAGTTAGCACAAGAAATTATTCGTGAGGAGCTAGCAGAAGAAG
TTCTTGCAGACCTTAGTGAAGTTCCAAAACCAATCGAATTGCTCAATATCTTGAACCACTATGTCATCGGTCAAGATCGT
GCCAAACGTGCTCTTGCTGTAGCGGTATATAACCACTACAAACGGATTAACTTTCACGATACGCGCGAAGACGAGACAGA
TGTTGAATTACAAAAATCAAACATCCTCATGATTGGACCGACTGGTTCAGGTAAGACTTTCTTGGCCCAGACCTTAGCAC
GTAGCTTGAATGTCCCATTTGCTATTGCCGATGCAACAGCCTTGACAGAAGCTGGTTATGTGGGAGAAGACGTTGAAAAC
ATTCTCTTGAAACTTCTTCAAGCAGCTGATTTCAACATCGAGCGTGCAGAACGAGGCATTATCTACGTCGATGAAATTGA
TAAGATTGCTAAGAAAAGTGAAAATGTCTCTATCACACGTGACGTTTCTGGTGAAGGGGTGCAACAAGCTCTCTTGAAGA
TTATCGAAGGCACCGTCGCTAGTGTACCACCTCAAGGGGGACGTAAACACCCTCAACAAGAGATGATCCAAGTGGATACC
AAGAACATCCTCTTTATCGTAGGTGGGGCTTTTGATGGGATCGAAGAAATTGTCAAGCAACGTCTCGGTGAAAAAGTCAT
CGGTTTCGGTAAGAACAATAAAGCTATTGATGAATCAAGCTCTTACATGCAAGAAATCGTTGCGGAAGATATTCAAAAAT
TTGGGATTATCCCAGAATTGATCGGACGTCTTCCAGTCTTTGCTGCTCTTGAGCAATTGACAGTTGACGACCTTGTCCGT
ATCTTGAAAGAGCCACGCAATGCCTTGGTAAAACAATATCAAACCTTGCTCTCTTATGATAACGTTGAATTGGAATTCGA
TGATGAAGCTCTTCAAGAGATTGCCAATAAAGCTATCGAAAGAAAAACAGGAGCTCGTGGACTTCGTTCGATTATCGAAG
AAACGATGATGGATGTCATGTTTGAAATTCCAAGTCAAGAAGATGTCAAACTTGTTCGAATTACAAAAGAAGCAGTAGAC
GGAACTGAAAAACCAATTCTCGAAACAGCCTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BGN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.049

0.566

Multiple sequence alignment