Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST4147_RS07470 Genome accession   NZ_CP065504
Coordinates   1432387..1433424 (-) Length   345 a.a.
NCBI ID   WP_011227485.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4147     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1427387..1438424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4147_RS07445 (ST4147_07455) ilvD 1427639..1429342 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  ST4147_RS07450 (ST4147_07460) - 1429470..1430651 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST4147_RS07460 (ST4147_07470) trmB 1430887..1431528 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST4147_RS07465 (ST4147_07475) - 1431538..1432329 (-) 792 WP_002951667.1 phosphotransferase family protein -
  ST4147_RS07470 (ST4147_07480) pptB 1432387..1433424 (-) 1038 WP_011227485.1 ABC transporter permease Regulator
  ST4147_RS07475 (ST4147_07485) pptA 1433421..1434152 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST4147_RS07480 (ST4147_07490) - 1434217..1434636 (+) 420 WP_011227486.1 HIT family protein -
  ST4147_RS07485 (ST4147_07495) - 1434633..1434941 (+) 309 WP_011227487.1 hypothetical protein -
  ST4147_RS07490 - 1435493..1435663 (-) 171 WP_011226439.1 hypothetical protein -
  ST4147_RS07495 (ST4147_07505) - 1435733..1436368 (-) 636 WP_011226440.1 DUF4230 domain-containing protein -
  ST4147_RS07500 - 1436387..1436512 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40079.63 Da        Isoelectric Point: 10.4910

>NTDB_id=511332 ST4147_RS07470 WP_011227485.1 1432387..1433424(-) (pptB) [Streptococcus thermophilus strain 4147]
MIAELFKERSRRLTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=511332 ST4147_RS07470 WP_011227485.1 1432387..1433424(-) (pptB) [Streptococcus thermophilus strain 4147]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGACTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
ATACGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

99.71

0.983

  pptB Streptococcus salivarius strain HSISS4

92.442

99.71

0.922