Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STT128_RS02390 Genome accession   NZ_CP065500
Coordinates   442269..442712 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST128     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 437269..447712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT128_RS02370 (STT128_02430) - 437793..438545 (-) 753 WP_011680801.1 NUDIX hydrolase -
  STT128_RS02375 (STT128_02435) - 438609..439715 (-) 1107 WP_347230121.1 AAA family ATPase -
  STT128_RS02380 (STT128_02440) gdhA 440059..441411 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STT128_RS02385 (STT128_02445) - 441669..442079 (+) 411 WP_011680804.1 peptide deformylase -
  STT128_RS02390 (STT128_02450) rcrR 442269..442712 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STT128_RS02395 (STT128_02455) rcrP 442716..444530 (+) 1815 WP_347230122.1 ABC transporter ATP-binding protein Regulator
  STT128_RS02400 (STT128_02460) rcrQ 444520..446298 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  STT128_RS02405 (STT128_02465) - 446454..446825 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=511184 STT128_RS02390 WP_002945408.1 442269..442712(+) (rcrR) [Streptococcus thermophilus strain ST128]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=511184 STT128_RS02390 WP_002945408.1 442269..442712(+) (rcrR) [Streptococcus thermophilus strain ST128]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537