Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KU538_RS03090 Genome accession   NZ_CP077922
Coordinates   631107..631880 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 202     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 626107..636880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU538_RS03070 (KU538_03050) trmFO 626451..627758 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  KU538_RS03075 (KU538_03055) xerC 628175..629071 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  KU538_RS03080 (KU538_03060) hslV 629068..629613 (+) 546 WP_225805682.1 ATP-dependent protease subunit HslV -
  KU538_RS03085 (KU538_03065) hslU 629679..631082 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  KU538_RS03090 (KU538_03070) codY 631107..631880 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KU538_RS03095 (KU538_03075) - 631931..632023 (+) 93 WP_001790530.1 hypothetical protein -
  KU538_RS03100 (KU538_03080) rpsB 632222..632989 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  KU538_RS03105 (KU538_03085) - 633023..633136 (+) 114 WP_001789890.1 hypothetical protein -
  KU538_RS03110 (KU538_03090) tsf 633171..634052 (+) 882 WP_000201387.1 translation elongation factor Ts -
  KU538_RS03115 (KU538_03095) pyrH 634189..634911 (+) 723 WP_000057330.1 UMP kinase -
  KU538_RS03120 (KU538_03100) frr 634930..635484 (+) 555 WP_001280006.1 ribosome recycling factor -
  KU538_RS03125 (KU538_03105) - 635857..636627 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=511186 KU538_RS03090 WP_000055337.1 631107..631880(+) (codY) [Staphylococcus aureus strain 202]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=511186 KU538_RS03090 WP_000055337.1 631107..631880(+) (codY) [Staphylococcus aureus strain 202]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428