Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST4067_RS07460 Genome accession   NZ_CP065496
Coordinates   1433747..1434781 (-) Length   344 a.a.
NCBI ID   WP_409481085.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4067     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1428747..1439781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS07435 (ST4067_07455) ilvD 1428999..1430717 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  ST4067_RS07440 (ST4067_07460) - 1430830..1432011 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST4067_RS07450 (ST4067_07470) trmB 1432247..1432888 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST4067_RS07455 (ST4067_07475) ccrZ 1432898..1433689 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  ST4067_RS07460 (ST4067_07480) pptB 1433747..1434781 (-) 1035 WP_409481085.1 ABC transporter permease Regulator
  ST4067_RS07465 (ST4067_07485) pptA 1434781..1435512 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS07470 (ST4067_07490) - 1435577..1435996 (+) 420 WP_011227486.1 HIT family protein -
  ST4067_RS07475 (ST4067_07495) - 1435993..1436301 (+) 309 WP_116920336.1 hypothetical protein -
  ST4067_RS07480 - 1436853..1437023 (-) 171 WP_011226439.1 hypothetical protein -
  ST4067_RS07485 (ST4067_07505) - 1437093..1437728 (-) 636 WP_011226440.1 DUF4230 domain-containing protein -
  ST4067_RS07490 - 1437747..1437872 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40000.49 Da        Isoelectric Point: 10.4910

>NTDB_id=511093 ST4067_RS07460 WP_409481085.1 1433747..1434781(-) (pptB) [Streptococcus thermophilus strain 4067]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=511093 ST4067_RS07460 WP_409481085.1 1433747..1434781(-) (pptB) [Streptococcus thermophilus strain 4067]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGTATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

99.128

100

0.991

  pptB Streptococcus salivarius strain HSISS4

93.023

100

0.93