Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST4021_RS07600 Genome accession   NZ_CP065493
Coordinates   1479752..1480789 (-) Length   345 a.a.
NCBI ID   WP_046206495.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4021     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1474752..1485789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4021_RS07575 (ST4021_07615) ilvD 1475019..1476722 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  ST4021_RS07580 (ST4021_07620) - 1476850..1478031 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST4021_RS07590 (ST4021_07630) trmB 1478252..1478893 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST4021_RS07595 (ST4021_07635) - 1478903..1479694 (-) 792 WP_002951667.1 phosphotransferase family protein -
  ST4021_RS07600 (ST4021_07640) pptB 1479752..1480789 (-) 1038 WP_046206495.1 ABC transporter permease Regulator
  ST4021_RS07605 (ST4021_07645) pptA 1480786..1481517 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST4021_RS07610 (ST4021_07650) - 1481582..1482001 (+) 420 WP_011681530.1 HIT family protein -
  ST4021_RS07615 (ST4021_07655) - 1481998..1482297 (+) 300 WP_011681531.1 hypothetical protein -
  ST4021_RS07620 (ST4021_07660) - 1482349..1483026 (-) 678 WP_011681532.1 hypothetical protein -
  ST4021_RS07625 (ST4021_07665) - 1483096..1483731 (-) 636 WP_011681533.1 DUF4230 domain-containing protein -
  ST4021_RS07630 - 1483750..1483875 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40168.71 Da        Isoelectric Point: 10.6158

>NTDB_id=510974 ST4021_RS07600 WP_046206495.1 1479752..1480789(-) (pptB) [Streptococcus thermophilus strain 4021]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTVLKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=510974 ST4021_RS07600 WP_046206495.1 1479752..1480789(-) (pptB) [Streptococcus thermophilus strain 4021]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAG
ATTTTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGATTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAC
ATACGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGTGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

99.71

0.983

  pptB Streptococcus salivarius strain HSISS4

93.023

99.71

0.928