Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ST4021_RS06820 Genome accession   NZ_CP065493
Coordinates   1321525..1322451 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4021     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1316525..1327451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4021_RS06790 (ST4021_06820) - 1316598..1317392 (-) 795 WP_011681412.1 HAD family hydrolase -
  ST4021_RS06795 (ST4021_06825) - 1317577..1317954 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  ST4021_RS06800 (ST4021_06830) - 1317959..1318657 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  ST4021_RS06805 (ST4021_06835) - 1318669..1319454 (+) 786 WP_011681414.1 hypothetical protein -
  ST4021_RS06810 (ST4021_06840) amiF 1319508..1320437 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  ST4021_RS06815 (ST4021_06845) amiE 1320430..1321515 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST4021_RS06820 (ST4021_06850) amiD 1321525..1322451 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST4021_RS06825 (ST4021_06855) amiC 1322451..1323944 (-) 1494 WP_011681416.1 ABC transporter permease Regulator
  ST4021_RS06830 (ST4021_06860) amiA 1324006..1325973 (-) 1968 WP_046206489.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=510969 ST4021_RS06820 WP_002946409.1 1321525..1322451(-) (amiD) [Streptococcus thermophilus strain 4021]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=510969 ST4021_RS06820 WP_002946409.1 1321525..1322451(-) (amiD) [Streptococcus thermophilus strain 4021]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964