Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SIR_RS12165 Genome accession   NC_022246
Coordinates   459929..463201 (+) Length   1090 a.a.
NCBI ID   WP_021002529.1    Uniprot ID   T1ZDR1
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 454929..468201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS12135 (SIR_0471) - 455235..455627 (+) 393 WP_020998413.1 hypothetical protein -
  SIR_RS12140 (SIR_0472) - 455627..456844 (+) 1218 WP_020998414.1 hypothetical protein -
  SIR_RS12145 (SIR_0473) - 456826..457227 (+) 402 WP_003072121.1 hypothetical protein -
  SIR_RS12150 (SIR_0474) - 457205..457498 (+) 294 WP_020998416.1 hypothetical protein -
  SIR_RS12155 (SIR_0475) - 457703..458596 (+) 894 WP_003072123.1 ABC transporter ATP-binding protein -
  SIR_RS12160 (SIR_0476) - 458593..459807 (+) 1215 WP_021002528.1 ABC transporter permease -
  SIR_RS12165 (SIR_0477) rexB 459929..463201 (+) 3273 WP_021002529.1 ATP-dependent nuclease subunit B Machinery gene
  SIR_RS12170 (SIR_0478) rexA 463198..466878 (+) 3681 WP_021002530.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125201.36 Da        Isoelectric Point: 5.3984

>NTDB_id=51085 SIR_RS12165 WP_021002529.1 459929..463201(+) (rexB) [Streptococcus intermedius B196]
MKLLYTDIRNPLTTILVKEAERLAQKGKRVFYIAPNSLSFEKERVVLSQLTHQASFAITVTRFTQMARYFVLNDIQQGSP
LDDIGLGMLFYKVLSEMDKKDLRVYGGIRTDAQFIQQLVELYHELQSAQMTFTDLEHLEEDEKKADFIKILQAVTQQINQ
SEFSSESNIMTFANHIMTGDVDKELQDLVLVIDGFTRFSAEEAYLVELLHSKGVEIVIGVYASEKAYRTSFREGNLYQAS
VDFLRHLADKYEVKPEHRLATPLDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLNQE
ELDLFEQYICFADIKGMGKFSKEFTHNQHQKFDLIRINHLRKEIVTPLLDFLKSRSQTAMGLLQNFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSASKIKLDDFLTLVQSGMLLSNYRTVPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIVQNKSLLSDEDRLLLNEATGEHSELVIATQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENNI
SSYLLELHEQPIALPIEVKRPQATSDDIGTYRGLLARIIELNQGEIDKERSLTDKDQTFWAVAVRVLRKRLENEGISIPN
VTSSLETETLSDQTLQVLYPPHQVFLLSTSALTEFYRNQYAYFLKYVLALQDEITIHPDARSHGNFLHCVFEKVMQASSS
EQFDYRLEKAIQETSQEAEFKAIYTENAVALFAHEVLLDTARATGLVLEKNDLVDTIQEEAVFGQEDVNFLSLSDGRKLQ
IRGKVDRIDRLRSNNSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQEKWADDGTQLFGAMYLQMANPLVPLAKTK
SYDDTVKEAMKTLGYKGLFLSDQAHQLNNLYNKKKVNLLSQEELETLLAYNALLYRRAAEQILAGQFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSRARHLVKLDKHSAGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=51085 SIR_RS12165 WP_021002529.1 459929..463201(+) (rexB) [Streptococcus intermedius B196]
ATGAAATTACTTTACACAGATATTCGCAATCCCTTAACAACGATTTTGGTGAAAGAAGCAGAGCGCTTGGCACAGAAAGG
TAAGCGCGTGTTTTATATTGCTCCTAACTCTCTTTCATTTGAAAAGGAGAGAGTAGTCTTAAGCCAGCTCACTCATCAAG
CGTCCTTTGCTATTACAGTGACGCGTTTTACCCAGATGGCACGCTATTTTGTCCTCAATGATATACAGCAAGGTAGCCCA
TTAGATGATATTGGTCTGGGAATGTTATTTTACAAAGTCTTGTCAGAAATGGATAAGAAGGACTTGCGAGTGTATGGCGG
TATCCGCACGGATGCACAATTTATTCAGCAGTTGGTTGAACTTTATCATGAGTTGCAGAGTGCTCAGATGACGTTCACGG
ATTTGGAACATCTGGAAGAAGATGAGAAGAAAGCAGATTTCATCAAGATTTTGCAGGCTGTTACACAGCAGATCAATCAG
AGTGAGTTTAGTTCTGAATCAAATATTATGACCTTTGCCAATCATATAATGACAGGTGATGTAGATAAGGAATTACAAGA
TTTAGTCTTGGTGATTGATGGCTTTACGCGTTTTTCTGCTGAGGAAGCCTACTTGGTTGAGCTACTGCATAGCAAGGGAG
TGGAAATTGTTATTGGTGTTTATGCAAGCGAAAAAGCATACCGTACAAGTTTTCGAGAGGGAAATCTCTATCAAGCTAGT
GTAGATTTCTTACGCCATTTGGCAGATAAATATGAAGTGAAGCCTGAGCATAGACTAGCAACACCATTAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACGGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAGGAAGAATTAGAATATGTAGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAGCGTATCATTTACAGTTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTCTATGGTCATTTAAACCAAGAA
GAGTTAGACTTGTTTGAGCAATATATCTGCTTTGCAGATATAAAAGGAATGGGTAAGTTTTCTAAGGAATTTACTCACAA
TCAACATCAAAAATTTGATCTCATTCGCATCAATCACTTAAGAAAAGAAATAGTCACTCCTCTTTTGGATTTTTTAAAAT
CTCGTAGTCAAACAGCAATGGGGTTACTTCAAAACTTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGTCATGTTTTAGAACA
GTTTGCCAGTGTCTTTTCAGCCAGCAAGATTAAGCTAGATGATTTTTTGACCTTGGTGCAGTCGGGAATGCTGTTATCTA
ATTATCGGACTGTTCCAGCAACAGTAGATGTCGTAACTGTTCAGTCTTATGATTTAATTGAGCCTTTGTCGAGTCCTTTT
GTCTATGCTATTGGTTTGACCCAAGATTATTTTCCAAAAATTGTCCAAAATAAGAGTCTTTTATCAGATGAAGATCGTTT
ATTGTTAAATGAAGCGACAGGTGAGCACTCAGAATTGGTGATTGCTACTCAGGAAAATCTTAAGAAAAATCGTTTTGTTG
CCTTGTCACTGTTGAATGCGGCAACAGACAGATTAGTTCTCTCTACTCCTCAGATTGTCAATGAAATAGAAAACAATATT
TCTTCCTATTTACTAGAACTACATGAACAACCAATTGCTTTGCCAATTGAAGTGAAGCGTCCACAGGCAACGAGTGATGA
TATTGGTACTTACCGCGGTTTATTGGCAAGGATTATTGAATTAAATCAAGGAGAGATTGACAAAGAGCGTTCTTTGACTG
ATAAAGACCAGACTTTTTGGGCAGTTGCCGTACGAGTTTTGCGCAAAAGATTAGAAAATGAAGGTATTTCGATTCCTAAT
GTAACATCAAGTCTTGAAACAGAGACTTTGTCAGATCAGACCTTACAGGTTCTTTATCCGCCTCATCAAGTATTTTTACT
ATCAACTTCAGCTTTGACAGAATTCTATCGTAATCAGTATGCTTATTTTTTGAAGTATGTCCTAGCTCTGCAAGATGAAA
TAACGATCCATCCAGATGCGCGCAGTCATGGAAATTTTCTGCATTGTGTGTTTGAAAAAGTCATGCAAGCTTCATCAAGT
GAGCAGTTTGATTATCGGCTAGAAAAAGCTATTCAAGAAACGAGCCAGGAAGCGGAATTTAAAGCGATTTATACTGAAAA
TGCAGTAGCTTTATTTGCGCATGAAGTGTTGCTTGATACGGCGCGTGCAACAGGGCTCGTTTTAGAAAAAAATGATTTGG
TAGATACTATTCAAGAAGAAGCAGTTTTTGGACAAGAAGATGTGAACTTTTTAAGCTTATCAGATGGACGTAAGCTTCAA
ATTCGCGGGAAAGTTGACCGAATTGACCGATTGAGGAGTAATAACAGTTTAGGAATTGTAGATTATAAATCAAGTGATAC
GAATTTTGATTTTCAAAAATTTTTTAATGGCTTAAATTCTCAATTGCCAACCTATCTAGCGGCGTTGAAGCAAGAAAAGT
GGGCAGATGATGGTACGCAGCTTTTTGGAGCTATGTATTTACAGATGGCTAACCCACTTGTGCCTTTAGCTAAAACGAAG
TCATACGATGATACGGTCAAAGAAGCGATGAAAACTCTGGGATACAAGGGCTTGTTTTTATCTGATCAAGCTCATCAGCT
CAATAACTTGTATAATAAAAAGAAAGTCAATTTGTTAAGTCAAGAAGAACTAGAAACTTTGTTAGCTTATAATGCACTCT
TGTACCGTCGTGCTGCCGAGCAGATATTGGCAGGGCAGTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCGATTACGGGCTTTGAAGCCAATCTTCACCTTTCTAGAGCCCGACATTTGGTTAAGCT
AGATAAGCACTCAGCAGGTGAAAAAAAACGTCAAGCGTGGATAGAAAAGATGAAGGAGGAGCTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZDR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.96

100

0.564

Multiple sequence alignment