Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SIR_RS11915 Genome accession   NC_022246
Coordinates   407743..408339 (+) Length   198 a.a.
NCBI ID   WP_021002498.1    Uniprot ID   T1ZEB7
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 402743..413339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS11890 (SIR_0423) - 402819..403652 (+) 834 WP_003076577.1 DegV family protein -
  SIR_RS11895 (SIR_0424) - 403781..404056 (+) 276 WP_003036014.1 HU family DNA-binding protein -
  SIR_RS11900 (SIR_0425) - 404224..404685 (+) 462 WP_009569143.1 Fur family transcriptional regulator -
  SIR_RS11905 (SIR_0426) - 404823..405515 (+) 693 WP_003036126.1 phosphoglycerate mutase -
  SIR_RS11910 (SIR_0427) pbp2b 405672..407732 (+) 2061 WP_009569142.1 penicillin-binding protein PBP2B -
  SIR_RS11915 (SIR_0428) recR 407743..408339 (+) 597 WP_021002498.1 recombination mediator RecR Machinery gene
  SIR_RS11920 (SIR_0429) - 408470..409516 (+) 1047 WP_041787686.1 D-alanine--D-alanine ligase -
  SIR_RS11925 (SIR_0430) - 409770..411140 (+) 1371 WP_021002500.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SIR_RS11930 (SIR_0431) - 411130..411678 (+) 549 WP_021002501.1 DUF1697 domain-containing protein -
  SIR_RS11935 (SIR_0432) - 411685..412389 (+) 705 WP_003072021.1 TIGR02206 family membrane protein -
  SIR_RS11940 (SIR_0433) - 412396..413082 (+) 687 WP_041787691.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21708.74 Da        Isoelectric Point: 4.3080

>NTDB_id=51083 SIR_RS11915 WP_021002498.1 407743..408339(+) (recR) [Streptococcus intermedius B196]
MLYPTPIAKLIESFSKLPGIGIKSATRLAFYTISMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDNPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIDPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=51083 SIR_RS11915 WP_021002498.1 407743..408339(+) (recR) [Streptococcus intermedius B196]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGAAAGTTTTTCAAAATTACCAGGAATTGGCATCAAATCAGCAACACG
TTTGGCATTTTATACCATTAGCATGAGTGATGATGATGTTAATGAATTTGCTAAAAATTTACTTGCAGCAAAACGTGAGT
TAACATATTGCTCTATTTGTGGGAATTTAACGGATGACAATCCCTGTGCTATCTGTACCGATGAGACTCGTGACCAATCG
ACTATTTTAGTTGTAGAAGATAGCCGAGATGTCTCTGCTATGGAAAACATTCAAGAATATCATGGCTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGATCCAGATGACATCAATCTGAAAAGTTTAATCACACGATTGATGGATA
GTGAAGTGACAGAAGTGATTGTAGCAACTAATGCAACAGCAGATGGAGAAGCAACTTCCATGTATATCTCACGAGTGTTA
AAGCCAGCTGGTATCAAAGTGACACGTCTTGCTCGAGGATTAGCAGTTGGTTCTGATATTGAATATGCAGATGAAGTGAC
TTTGCTTCGAGCTATTGAGAATCGTACGGAGTTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZEB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

89.899

100

0.899
  recR Bacillus subtilis subsp. subtilis str. 168

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment