Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   STCNRZ1575_RS03125 Genome accession   NZ_CP065490
Coordinates   585479..586705 (+) Length   408 a.a.
NCBI ID   WP_011680904.1    Uniprot ID   Q03LN0
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 580479..591705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS03105 (STCNRZ1575_03095) - 581054..582325 (-) 1272 WP_011680901.1 hydroxymethylglutaryl-CoA reductase, degradative -
  STCNRZ1575_RS03110 (STCNRZ1575_03100) - 582318..583493 (-) 1176 WP_111679414.1 hydroxymethylglutaryl-CoA synthase -
  STCNRZ1575_RS03115 (STCNRZ1575_03105) - 583815..584675 (+) 861 WP_002950145.1 thymidylate synthase -
  STCNRZ1575_RS03120 (STCNRZ1575_03110) - 584783..585286 (+) 504 WP_134973137.1 dihydrofolate reductase -
  STCNRZ1575_RS03125 (STCNRZ1575_03115) clpX 585479..586705 (+) 1227 WP_011680904.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  STCNRZ1575_RS03130 (STCNRZ1575_03120) yihA 586715..587314 (+) 600 WP_011680905.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  STCNRZ1575_RS03135 (STCNRZ1575_03125) - 587444..588820 (+) 1377 WP_011680906.1 amino acid permease -
  STCNRZ1575_RS03140 (STCNRZ1575_03130) mmuM 588832..589782 (+) 951 WP_011680907.1 homocysteine S-methyltransferase -
  STCNRZ1575_RS03145 (STCNRZ1575_03135) - 589895..590149 (+) 255 WP_002950164.1 DUF1912 family protein -
  STCNRZ1575_RS03150 (STCNRZ1575_03140) - 590221..590580 (+) 360 WP_011226993.1 helix-hairpin-helix domain-containing protein -
  STCNRZ1575_RS03155 (STCNRZ1575_03145) plsY 590694..591335 (-) 642 WP_002950167.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45033.47 Da        Isoelectric Point: 4.4119

>NTDB_id=510774 STCNRZ1575_RS03125 WP_011680904.1 585479..586705(+) (clpX) [Streptococcus thermophilus strain CNRZ1575]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREETAEEVLADLAETPKPKELLDILNNYVVGQDRV
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKEAVDGK
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=510774 STCNRZ1575_RS03125 WP_011680904.1 585479..586705(+) (clpX) [Streptococcus thermophilus strain CNRZ1575]
ATGGCTGGAAATCGTAATGAAGAGATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTGAAGAAAATTATCGC
CGGTAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAACGGCTGAAGAAGTTT
TAGCTGACTTGGCTGAAACGCCAAAGCCAAAAGAACTTTTAGATATTTTGAACAACTATGTCGTGGGGCAAGATCGTGTC
AAACGTGCCTTGGCAGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGATAATGATGTGGA
CTTGCAAAAATCAAATATCCTCATGATTGGACCAACAGGGTCAGGGAAAACTTACTTAGCTCAGACTTTGGCTCGTAGTT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTAATCCAAGCGGCAGACTTTAATATTGAACGTGCGGAACGTGGGATTATCTACGTGGACGAGATTGATAAGAT
TGCCAAAAAAGGTGAGAATGTTTCAATCACTCGTGATGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATTG
AGGGAACAGTGGCTAGTGTTCCACCTCAAGGTGGTCGTAAACACCCTAATCAAGAGATGATTCAAATTGATACTAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGGTT
TGGTCAAAATAATAAAGCAATTGATGACGAATCATCATACATGAAAGAAATTGTGGCTGAAGATATCCAAAAATTTGGAC
TTATCCCTGAATTTATCGGACGTTTGCCAGTTCTTGCGGCCCTTGAACAGTTAACGGTTGACGACTTGGTGCGTATTTTG
ACAGAGCCTAGGAATGCCTTGGTGAAGCAGTATCAAACCCTCTTGTCTTATGATGGGGTTGAACTTGAGTTTGACCAGGA
TGCCCTTGAGGCTATTGCAAGTAAGGCAATTGAACGTAAGACTGGTGCGCGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTTATGTTTGAAATCCCTAGTCTGGAAGATGTCACTAAGGTTCGTATCACCAAAGAAGCTGTTGATGGGAAA
GCTGCTCCAGTATTGGAAACAGCATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03LN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.753

100

0.89
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.757

99.755

0.566