Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STCNRZ302_RS07670 Genome accession   NZ_CP065489
Coordinates   1486114..1487151 (-) Length   345 a.a.
NCBI ID   WP_179970589.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ302     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1481114..1492151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ302_RS07645 (STCNRZ302_07570) ilvD 1481366..1483069 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  STCNRZ302_RS07650 (STCNRZ302_07575) - 1483197..1484378 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STCNRZ302_RS07660 (STCNRZ302_07585) trmB 1484614..1485255 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STCNRZ302_RS07665 (STCNRZ302_07590) - 1485265..1486056 (-) 792 WP_002951667.1 phosphotransferase family protein -
  STCNRZ302_RS07670 (STCNRZ302_07595) pptB 1486114..1487151 (-) 1038 WP_179970589.1 ABC transporter permease Regulator
  STCNRZ302_RS07675 (STCNRZ302_07600) pptA 1487148..1487879 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  STCNRZ302_RS07680 (STCNRZ302_07605) - 1487944..1488363 (+) 420 WP_011681530.1 HIT family protein -
  STCNRZ302_RS07685 (STCNRZ302_07610) - 1488360..1488668 (+) 309 WP_014608635.1 hypothetical protein -
  STCNRZ302_RS07690 (STCNRZ302_07615) - 1488710..1489441 (-) 732 WP_014608636.1 hypothetical protein -
  STCNRZ302_RS07695 (STCNRZ302_07620) - 1489460..1490062 (-) 603 WP_347140438.1 DUF4230 domain-containing protein -
  STCNRZ302_RS07700 - 1490113..1490238 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40159.70 Da        Isoelectric Point: 10.5812

>NTDB_id=510736 STCNRZ302_RS07670 WP_179970589.1 1486114..1487151(-) (pptB) [Streptococcus thermophilus strain CNRZ302]
MIAELFKERSRRFTTRCAKYNRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=510736 STCNRZ302_RS07670 WP_179970589.1 1486114..1487151(-) (pptB) [Streptococcus thermophilus strain CNRZ302]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAATCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAG
ATTTTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGATTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
ATACGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

99.419

99.71

0.991

  pptB Streptococcus salivarius strain HSISS4

92.151

99.71

0.919