Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STAVA1121_RS07665 Genome accession   NZ_CP065488
Coordinates   1447258..1448295 (-) Length   345 a.a.
NCBI ID   WP_347131181.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1442258..1453295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS07640 (STAVA1121_07540) ilvD 1442510..1444213 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  STAVA1121_RS07645 (STAVA1121_07545) - 1444341..1445522 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STAVA1121_RS07655 (STAVA1121_07555) trmB 1445758..1446399 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STAVA1121_RS07660 (STAVA1121_07560) - 1446409..1447200 (-) 792 WP_002951667.1 phosphotransferase family protein -
  STAVA1121_RS07665 (STAVA1121_07565) pptB 1447258..1448295 (-) 1038 WP_347131181.1 ABC transporter permease Regulator
  STAVA1121_RS07670 (STAVA1121_07570) pptA 1448292..1449023 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS07675 (STAVA1121_07575) - 1449088..1449507 (+) 420 WP_347131183.1 HIT family protein -
  STAVA1121_RS07680 (STAVA1121_07580) - 1449504..1449812 (+) 309 WP_087010123.1 hypothetical protein -
  STAVA1121_RS07685 - 1449854..1450069 (-) 216 WP_096811621.1 hypothetical protein -
  STAVA1121_RS07690 - 1450364..1450534 (-) 171 WP_011226439.1 hypothetical protein -
  STAVA1121_RS07695 (STAVA1121_07590) - 1450604..1451239 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  STAVA1121_RS07700 - 1451258..1451383 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40179.77 Da        Isoelectric Point: 10.5243

>NTDB_id=510678 STAVA1121_RS07665 WP_347131181.1 1447258..1448295(-) (pptB) [Streptococcus thermophilus strain AVA1121]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKCTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLLMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=510678 STAVA1121_RS07665 WP_347131181.1 1447258..1448295(-) (pptB) [Streptococcus thermophilus strain AVA1121]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAAGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTTTGGCCTTGGGTCTTCCAGTTTGGAGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
GTACGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTATCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
ACAATCTTAAGCGCTTGATTAATCAAATTGTCCTTTTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.384

99.71

0.971

  pptB Streptococcus salivarius strain HSISS4

92.151

99.71

0.919