Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   STAVA1121_RS05475 Genome accession   NZ_CP065488
Coordinates   1018036..1018848 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain AVA1121     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013036..1023848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS05450 (STAVA1121_05380) - 1013974..1014360 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  STAVA1121_RS05455 (STAVA1121_05385) - 1014418..1015330 (-) 913 Protein_1018 GNAT family N-acetyltransferase -
  STAVA1121_RS05460 (STAVA1121_05390) yidA 1015538..1016347 (+) 810 WP_011226081.1 sugar-phosphatase -
  STAVA1121_RS05465 (STAVA1121_05395) - 1016349..1017563 (+) 1215 WP_347131084.1 aminoacyltransferase -
  STAVA1121_RS05470 (STAVA1121_05400) - 1017615..1017976 (-) 362 Protein_1021 YbaN family protein -
  STAVA1121_RS05475 (STAVA1121_05405) vicX 1018036..1018848 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  STAVA1121_RS05480 (STAVA1121_05410) vicK 1018854..1020194 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  STAVA1121_RS05485 (STAVA1121_05415) vicR 1020187..1020894 (-) 708 WP_173940375.1 response regulator YycF Regulator
  STAVA1121_RS05490 (STAVA1121_05420) - 1021420..1022187 (+) 768 WP_179966655.1 amino acid ABC transporter ATP-binding protein -
  STAVA1121_RS05495 (STAVA1121_05425) - 1022199..1023032 (+) 834 WP_002953142.1 transporter substrate-binding domain-containing protein -
  STAVA1121_RS05500 (STAVA1121_05430) - 1023050..1023748 (+) 699 WP_065973256.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=510665 STAVA1121_RS05475 WP_011681204.1 1018036..1018848(-) (vicX) [Streptococcus thermophilus strain AVA1121]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=510665 STAVA1121_RS05475 WP_011681204.1 1018036..1018848(-) (vicX) [Streptococcus thermophilus strain AVA1121]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774