Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   STMM20_RS07050 Genome accession   NZ_CP065485
Coordinates   1379173..1380399 (-) Length   408 a.a.
NCBI ID   WP_002950151.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374173..1385399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS07020 (STMM20_07040) plsY 1374537..1375178 (+) 642 WP_084825852.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  STMM20_RS07025 (STMM20_07045) - 1375289..1375654 (-) 366 WP_084825851.1 helix-hairpin-helix domain-containing protein -
  STMM20_RS07030 (STMM20_07050) - 1375729..1375983 (-) 255 WP_002950164.1 DUF1912 family protein -
  STMM20_RS07035 (STMM20_07055) mmuM 1376096..1377046 (-) 951 WP_347103508.1 homocysteine S-methyltransferase -
  STMM20_RS07040 (STMM20_07060) - 1377058..1378434 (-) 1377 WP_100284968.1 amino acid permease -
  STMM20_RS07045 (STMM20_07065) yihA 1378564..1379163 (-) 600 WP_002950154.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  STMM20_RS07050 (STMM20_07070) clpX 1379173..1380399 (-) 1227 WP_002950151.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  STMM20_RS07055 (STMM20_07075) - 1380417..1380587 (-) 171 WP_002886174.1 hypothetical protein -
  STMM20_RS07060 (STMM20_07080) - 1380592..1381095 (-) 504 WP_134973137.1 dihydrofolate reductase -
  STMM20_RS07065 (STMM20_07085) - 1381203..1382063 (-) 861 WP_002950145.1 thymidylate synthase -
  STMM20_RS07070 (STMM20_07090) - 1382385..1383560 (+) 1176 WP_011680902.1 hydroxymethylglutaryl-CoA synthase -
  STMM20_RS07075 (STMM20_07095) - 1383553..1384824 (+) 1272 WP_011680901.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45063.49 Da        Isoelectric Point: 4.4119

>NTDB_id=510491 STMM20_RS07050 WP_002950151.1 1379173..1380399(-) (clpX) [Streptococcus thermophilus strain MM20]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREETAEEVLADLAETPKPKELLDILNNYVVGQDRV
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIPEFIGRLPVLATLEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKEAVDGK
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=510491 STMM20_RS07050 WP_002950151.1 1379173..1380399(-) (clpX) [Streptococcus thermophilus strain MM20]
ATGGCTGGAAATCGTAATGAAGAGATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAGGAAGTGAAGAAAATTATCGC
CGGTAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAACGGCTGAAGAAGTTT
TAGCTGACTTGGCTGAAACGCCAAAGCCAAAAGAACTTTTAGATATTTTGAACAACTATGTCGTGGGGCAAGATCGTGTC
AAACGTGCCTTGGCAGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGATAATGATGTGGA
CTTGCAAAAATCAAATATCCTCATGATTGGACCAACAGGGTCAGGGAAAACTTACTTAGCTCAGACTTTGGCTCGTAGTT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTAATCCAAGCGGCAGACTTTAATATTGAACGTGCGGAACGTGGGATTATCTACGTGGACGAGATTGATAAGAT
TGCCAAAAAAGGTGAGAATGTTTCAATCACTCGTGATGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATTG
AGGGAACAGTGGCTAGTGTTCCACCTCAAGGTGGTCGTAAACACCCTAATCAAGAGATGATTCAAATTGATACTAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGGTT
TGGTCAAAATAATAAAGCAATTGATGACGAATCATCATACATGAAAGAAATTGTGGCTGAAGATATCCAAAAATTTGGAC
TTATCCCTGAATTTATCGGACGTTTGCCAGTTCTTGCGACCCTTGAACAGTTAACGGTTGACGACTTGGTGCGTATTTTG
ACAGAGCCTAGGAATGCCTTGGTGAAGCAGTATCAAACCCTCTTGTCTTATGATGGGGTTGAACTTGAGTTTGACCAGGA
TGCCCTTGAGGCTATTGCAAGTAAGGCAATTGAACGTAAGACTGGTGCGCGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTTATGTTTGAAATCCCTAGTCTGGAAGATGTCACTAAGGTTCGTATCACCAAAGAAGCTGTTGATGGGAAA
GCTGCTCCAGTATTGGAAACAGCATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.509

100

0.887
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.757

99.755

0.566