Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STMM1_RS07595 Genome accession   NZ_CP065484
Coordinates   1462234..1463271 (-) Length   345 a.a.
NCBI ID   WP_011681529.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1457234..1468271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS07570 (STMM1_07525) ilvD 1457486..1459189 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  STMM1_RS07575 (STMM1_07530) - 1459317..1460498 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STMM1_RS07585 (STMM1_07540) trmB 1460734..1461375 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STMM1_RS07590 (STMM1_07545) - 1461385..1462176 (-) 792 WP_002951667.1 phosphotransferase family protein -
  STMM1_RS07595 (STMM1_07550) pptB 1462234..1463271 (-) 1038 WP_011681529.1 ABC transporter permease Regulator
  STMM1_RS07600 (STMM1_07555) pptA 1463268..1463999 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  STMM1_RS07605 (STMM1_07560) - 1464064..1464483 (+) 420 WP_011681530.1 HIT family protein -
  STMM1_RS07610 (STMM1_07565) - 1464480..1464779 (+) 300 WP_014621895.1 hypothetical protein -
  STMM1_RS07615 (STMM1_07570) - 1464831..1465559 (-) 729 WP_023909893.1 hypothetical protein -
  STMM1_RS07620 (STMM1_07575) - 1465577..1466212 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  STMM1_RS07625 - 1466231..1466356 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40132.68 Da        Isoelectric Point: 10.5812

>NTDB_id=510436 STMM1_RS07595 WP_011681529.1 1462234..1463271(-) (pptB) [Streptococcus thermophilus strain MM1]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=510436 STMM1_RS07595 WP_011681529.1 1462234..1463271(-) (pptB) [Streptococcus thermophilus strain MM1]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAG
ATTTTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGATTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
ATACGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

99.709

99.71

0.994

  pptB Streptococcus salivarius strain HSISS4

92.442

99.71

0.922