Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ST90730_RS06650 Genome accession   NZ_CP065481
Coordinates   1278295..1279221 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90730     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273295..1284221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90730_RS06620 (ST90730_06645) - 1273374..1274168 (-) 795 WP_059257398.1 HAD family hydrolase -
  ST90730_RS06625 (ST90730_06650) - 1274351..1274728 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  ST90730_RS06630 (ST90730_06655) - 1274733..1275431 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  ST90730_RS06635 (ST90730_06660) - 1275443..1276228 (+) 786 WP_002951425.1 hypothetical protein -
  ST90730_RS06640 (ST90730_06665) amiF 1276278..1277207 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  ST90730_RS06645 (ST90730_06670) amiE 1277200..1278285 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST90730_RS06650 (ST90730_06675) amiD 1278295..1279221 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST90730_RS06655 (ST90730_06680) amiC 1279221..1280714 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  ST90730_RS06660 (ST90730_06685) amiA 1280776..1282743 (-) 1968 WP_059257397.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=510256 ST90730_RS06650 WP_002946409.1 1278295..1279221(-) (amiD) [Streptococcus thermophilus strain 90730]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=510256 ST90730_RS06650 WP_002946409.1 1278295..1279221(-) (amiD) [Streptococcus thermophilus strain 90730]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964