Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ST90729_RS06850 Genome accession   NZ_CP065480
Coordinates   1327995..1329080 (-) Length   361 a.a.
NCBI ID   WP_011226304.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1322995..1334080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS06820 (ST90729_06800) - 1323357..1324175 (-) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -
  ST90729_RS06825 (ST90729_06805) - 1324168..1324962 (-) 795 WP_084829753.1 HAD family hydrolase -
  ST90729_RS06830 (ST90729_06810) - 1325146..1325523 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  ST90729_RS06835 (ST90729_06815) - 1325528..1326226 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  ST90729_RS06840 (ST90729_06820) - 1326238..1327023 (+) 786 WP_002951425.1 hypothetical protein -
  ST90729_RS06845 (ST90729_06825) amiF 1327073..1328002 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  ST90729_RS06850 (ST90729_06830) amiE 1327995..1329080 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST90729_RS06855 (ST90729_06835) amiD 1329090..1330016 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST90729_RS06860 (ST90729_06840) amiC 1330016..1331509 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  ST90729_RS06865 (ST90729_06845) amiA 1331571..1333538 (-) 1968 WP_347116470.1 peptide ABC transporter substrate-binding protein Regulator
  ST90729_RS06870 (ST90729_06850) - 1333742..1333932 (-) 191 Protein_1298 IS3 family transposase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39864.62 Da        Isoelectric Point: 4.7435

>NTDB_id=510198 ST90729_RS06850 WP_011226304.1 1327995..1329080(-) (amiE) [Streptococcus thermophilus strain 90729]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHQDWAAIRGAKIATIFQDPMTSLNPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDNGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKILANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=510198 ST90729_RS06850 WP_011226304.1 1327995..1329080(-) (amiE) [Streptococcus thermophilus strain 90729]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCTCTTGATTTAGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGAAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGTCGTGTAGCTAGCGGATCTATTGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACCAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCAATGACCAG
TCTTAACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGGAAAACAGCCAAGGAAGCTA
AAAAAATGGCAATTGATTACATGGACAAGGTTGGCATTCCAGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGCGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGTCTGCCACAATTGGC
TGATGATAATGGAAAACTCTTCTCAATTCCAGGGACGCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCTAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

100

100

1
  amiE Streptococcus thermophilus LMD-9

100

100

1
  amiE Streptococcus salivarius strain HSISS4

96.953

100

0.97
  oppD Streptococcus mutans UA159

54.441

96.676

0.526