Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST90728_RS02210 Genome accession   NZ_CP065479
Coordinates   400579..401022 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 395579..406022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS02190 (ST90728_02205) - 396101..396855 (-) 755 Protein_370 NUDIX hydrolase -
  ST90728_RS02195 (ST90728_02210) - 396919..398025 (-) 1107 Protein_371 AAA family ATPase -
  ST90728_RS02200 (ST90728_02215) gdhA 398369..399721 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST90728_RS02205 (ST90728_02220) - 399979..400389 (+) 411 WP_011225559.1 peptide deformylase -
  ST90728_RS02210 (ST90728_02225) rcrR 400579..401022 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  ST90728_RS02215 (ST90728_02230) rcrP 401026..402840 (+) 1815 WP_260222925.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS02220 (ST90728_02235) rcrQ 402830..404608 (+) 1779 WP_232975654.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS02225 (ST90728_02240) - 404764..405135 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510114 ST90728_RS02210 WP_002945408.1 400579..401022(+) (rcrR) [Streptococcus thermophilus strain 90728]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510114 ST90728_RS02210 WP_002945408.1 400579..401022(+) (rcrR) [Streptococcus thermophilus strain 90728]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537