Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ST90728_RS02220 Genome accession   NZ_CP065479
Coordinates   402830..404608 (+) Length   592 a.a.
NCBI ID   WP_232975654.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397830..409608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS02200 (ST90728_02215) gdhA 398369..399721 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST90728_RS02205 (ST90728_02220) - 399979..400389 (+) 411 WP_011225559.1 peptide deformylase -
  ST90728_RS02210 (ST90728_02225) rcrR 400579..401022 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  ST90728_RS02215 (ST90728_02230) rcrP 401026..402840 (+) 1815 WP_260222925.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS02220 (ST90728_02235) rcrQ 402830..404608 (+) 1779 WP_232975654.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS02225 (ST90728_02240) - 404764..405135 (+) 372 WP_002945426.1 hypothetical protein -
  ST90728_RS02230 - 405482..406320 (+) 839 Protein_378 HAMP domain-containing sensor histidine kinase -
  ST90728_RS02235 (ST90728_02250) pyrH 406556..407293 (+) 738 WP_002949867.1 UMP kinase -
  ST90728_RS02240 (ST90728_02255) frr 407308..407865 (+) 558 WP_002949868.1 ribosome recycling factor -
  ST90728_RS02245 (ST90728_02260) cvfB 407956..408813 (+) 858 WP_014608029.1 RNA-binding virulence regulatory protein CvfB -
  ST90728_RS02250 (ST90728_02265) - 408822..409037 (+) 216 WP_347114310.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65136.13 Da        Isoelectric Point: 4.9424

>NTDB_id=510116 ST90728_RS02220 WP_232975654.1 402830..404608(+) (rcrQ) [Streptococcus thermophilus strain 90728]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESDKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=510116 ST90728_RS02220 WP_232975654.1 402830..404608(+) (rcrQ) [Streptococcus thermophilus strain 90728]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATTTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGACAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTAGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689