Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   KU540_RS07065 Genome accession   NZ_CP077894
Coordinates   1389490..1390113 (+) Length   207 a.a.
NCBI ID   WP_001045134.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384490..1395113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS07045 (KU540_07005) - 1384939..1385334 (+) 396 WP_000901023.1 hypothetical protein -
  KU540_RS07050 (KU540_07010) fumC 1385530..1386915 (+) 1386 WP_000116238.1 class II fumarate hydratase -
  KU540_RS07055 (KU540_07015) - 1387372..1388193 (-) 822 WP_000669377.1 RluA family pseudouridine synthase -
  KU540_RS07060 (KU540_07020) - 1388356..1389468 (+) 1113 WP_000437972.1 GAF domain-containing sensor histidine kinase -
  KU540_RS07065 (KU540_07025) vraR 1389490..1390113 (+) 624 WP_001045134.1 response regulator transcription factor Regulator
  KU540_RS07070 (KU540_07030) - 1390470..1390934 (+) 465 WP_000375864.1 helix-turn-helix transcriptional regulator -
  KU540_RS07075 (KU540_07035) - 1391113..1392237 (+) 1125 WP_000992506.1 DUF445 domain-containing protein -
  KU540_RS07080 (KU540_07040) - 1392306..1392650 (+) 345 WP_000290301.1 YlbF/YmcA family competence regulator -
  KU540_RS07085 (KU540_07045) - 1393045..1393128 (+) 84 WP_031785438.1 hypothetical protein -
  KU540_RS07090 (KU540_07050) - 1393440..1394636 (+) 1197 WP_153159389.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23933.61 Da        Isoelectric Point: 5.3565

>NTDB_id=510107 KU540_RS07065 WP_001045134.1 1389490..1390113(+) (vraR) [Staphylococcus aureus strain 329]
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVL
VLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNDEKMIHPKAQDVIETVSQKPHYTNKLSKREIEVLREMVK
GKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=510107 KU540_RS07065 WP_001045134.1 1389490..1390113(+) (vraR) [Staphylococcus aureus strain 329]
ATGAACAAAGTAATATTAGTAGATGACCATTATATTGTGCGACAAGGATTGCGATTTTTATTATCCACGATTGAAAACAT
AGAAGTTTTACAAGACTTTGCAGATGGAGAAACATTTTTAGAATATTTAAAAGAGCATGAGCACCCTGATATTGTGCTAT
TAGATTTAGTGATGCCTGGCATGAATGGTATTGAAATTACGGAATATATTAAGGCGCATTATCCGGAAATTAAAGTATTA
GTATTAACAAGTTACGTTGATGATGAACATGTAATATCAGCAATCAATAAAGGTGCTGATGGTTATGAAATGAAAGACGT
TGAGCCTCAGCAATTAATTGAAACAATTAGGCGTGTCATGAACGACGAAAAAATGATACATCCAAAAGCACAAGATGTAA
TCGAAACAGTTAGTCAAAAACCACACTACACGAATAAGTTGTCAAAGAGAGAAATTGAAGTGTTACGTGAAATGGTTAAA
GGTAAAACAAATAAAGAGATTGCAGAAACTTTATTTGTATCTGAAAAAACAATTAAAACACATGTCAGTCATATATTTAG
TAAATTACAAGTTAGCGATCGTACACAAGCAGCAATTTATGCAATGGAAAATAAGTTGATTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.097

100

0.401
  degU Bacillus subtilis subsp. subtilis str. 168

35.135

100

0.377