Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ST4078_RS03060 Genome accession   NZ_CP065477
Coordinates   564456..565682 (+) Length   408 a.a.
NCBI ID   WP_002950151.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4078     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 559456..570682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4078_RS03035 (ST4078_02985) - 560031..561302 (-) 1272 WP_011680901.1 hydroxymethylglutaryl-CoA reductase, degradative -
  ST4078_RS03040 (ST4078_02990) - 561295..562470 (-) 1176 WP_011680902.1 hydroxymethylglutaryl-CoA synthase -
  ST4078_RS03045 (ST4078_02995) - 562792..563652 (+) 861 WP_002950145.1 thymidylate synthase -
  ST4078_RS03050 (ST4078_03000) - 563760..564263 (+) 504 WP_002950147.1 dihydrofolate reductase -
  ST4078_RS03055 (ST4078_03005) - 564268..564438 (+) 171 WP_002886174.1 hypothetical protein -
  ST4078_RS03060 (ST4078_03010) clpX 564456..565682 (+) 1227 WP_002950151.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ST4078_RS03065 (ST4078_03015) yihA 565692..566291 (+) 600 WP_011680905.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ST4078_RS03070 (ST4078_03020) - 566421..567797 (+) 1377 WP_014608109.1 amino acid permease -
  ST4078_RS03075 (ST4078_03025) mmuM 567809..568759 (+) 951 WP_011680907.1 homocysteine S-methyltransferase -
  ST4078_RS03080 (ST4078_03030) - 568872..569126 (+) 255 WP_002950164.1 DUF1912 family protein -
  ST4078_RS03085 (ST4078_03035) - 569198..569557 (+) 360 WP_011226993.1 helix-hairpin-helix domain-containing protein -
  ST4078_RS03090 (ST4078_03040) plsY 569671..570312 (-) 642 WP_002950167.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45063.49 Da        Isoelectric Point: 4.4119

>NTDB_id=510001 ST4078_RS03060 WP_002950151.1 564456..565682(+) (clpX) [Streptococcus thermophilus strain 4078]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREETAEEVLADLAETPKPKELLDILNNYVVGQDRV
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIPEFIGRLPVLATLEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKEAVDGK
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=510001 ST4078_RS03060 WP_002950151.1 564456..565682(+) (clpX) [Streptococcus thermophilus strain 4078]
ATGGCTGGAAATCGTAATGAAGAGATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTGAAGAAAATTATCGC
CGGTAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAACGGCTGAAGAAGTTT
TAGCTGACTTGGCTGAAACGCCAAAGCCAAAAGAACTTTTAGATATTTTGAACAACTATGTCGTGGGGCAAGATCGTGTC
AAACGTGCCTTGGCAGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGATAATGATGTGGA
CTTGCAAAAATCAAATATCCTCATGATTGGACCAACAGGGTCAGGGAAAACTTACTTAGCTCAGACTTTGGCTCGTAGTT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTAATCCAAGCGGCAGACTTTAATATTGAACGTGCGGAACGTGGGATTATCTACGTGGACGAGATTGATAAGAT
TGCCAAAAAAGGTGAGAATGTTTCAATCACTCGTGATGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATTG
AGGGAACAGTGGCTAGTGTTCCACCTCAAGGTGGTCGTAAACACCCTAATCAAGAGATGATTCAAATTGATACTAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGGTT
TGGTCAAAATAATAAAGCAATTGATGACGAATCATCATACATGAAAGAAATTGTGGCTGAAGATATCCAAAAATTTGGAC
TTATCCCTGAATTTATCGGACGTTTGCCAGTTCTTGCGACCCTTGAACAGTTAACGGTTGACGACTTGGTGCGTATTTTG
ACAGAGCCTAGGAATGCCTTGGTGAAGCAGTATCAAACCCTCTTGTCTTATGATGGGGTTGAACTTGAGTTTGACCAGGA
TGCCCTTGAGGCTATTGCAAGTAAGGCAATTGAACGTAAGACTGGTGCGCGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTTATGTTTGAAATCCCTAGTCTGGAAGATGTCACTAAGGTTCGTATCACCAAAGAAGCTGTTGATGGGAAA
GCTGCTCCAGTATTGGAAACAGCATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.509

100

0.887
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.757

99.755

0.566