Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   I5V48_RS11940 Genome accession   NZ_CP065430
Coordinates   2494981..2495745 (+) Length   254 a.a.
NCBI ID   WP_004195351.1    Uniprot ID   A0A0Z8GL71
Organism   Streptococcus suis strain YZDH1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2489981..2500745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS11900 (I5V48_11900) - 2490347..2490682 (+) 336 WP_306172866.1 helix-turn-helix domain-containing protein -
  I5V48_RS11905 (I5V48_11905) - 2490785..2491858 (+) 1074 WP_043025828.1 site-specific integrase -
  I5V48_RS11925 (I5V48_11925) - 2492363..2493046 (-) 684 WP_043024643.1 YoaK family protein -
  I5V48_RS11930 (I5V48_11930) rlmH 2493071..2493550 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  I5V48_RS11935 (I5V48_11935) htrA 2493724..2494920 (+) 1197 WP_043024644.1 S1C family serine protease Regulator
  I5V48_RS11940 (I5V48_11940) spo0J 2494981..2495745 (+) 765 WP_004195351.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28994.26 Da        Isoelectric Point: 9.1678

>NTDB_id=509539 I5V48_RS11940 WP_004195351.1 2494981..2495745(+) (spo0J) [Streptococcus suis strain YZDH1]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGQISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAVNKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=509539 I5V48_RS11940 WP_004195351.1 2494981..2495745(+) (spo0J) [Streptococcus suis strain YZDH1]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTACAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGACAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAAGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGTAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8GL71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547