Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | I5776_RS08240 | Genome accession | NZ_CP065425 |
| Coordinates | 1660694..1661797 (+) | Length | 367 a.a. |
| NCBI ID | WP_202780151.1 | Uniprot ID | - |
| Organism | Heyndrickxia vini strain JCM 19841 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1655694..1666797
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5776_RS08215 (I5776_08210) | - | 1656016..1657887 (+) | 1872 | WP_202780146.1 | LTA synthase family protein | - |
| I5776_RS08220 (I5776_08215) | - | 1657974..1659095 (+) | 1122 | WP_202780147.1 | hypothetical protein | - |
| I5776_RS08225 (I5776_08220) | - | 1659127..1659300 (-) | 174 | WP_202780148.1 | DUF2759 domain-containing protein | - |
| I5776_RS08230 (I5776_08225) | - | 1659551..1660177 (+) | 627 | WP_202780149.1 | MBL fold metallo-hydrolase | - |
| I5776_RS08235 (I5776_08230) | - | 1660230..1660472 (-) | 243 | WP_202780150.1 | DUF2626 domain-containing protein | - |
| I5776_RS08240 (I5776_08235) | comGA | 1660694..1661797 (+) | 1104 | WP_202780151.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| I5776_RS08245 (I5776_08240) | comGB | 1661748..1662776 (+) | 1029 | WP_202780152.1 | competence type IV pilus assembly protein ComGB | - |
| I5776_RS08250 (I5776_08245) | comGC | 1662791..1663105 (+) | 315 | WP_202780153.1 | competence type IV pilus major pilin ComGC | - |
| I5776_RS08255 (I5776_08250) | comGD | 1663105..1663545 (+) | 441 | WP_202780154.1 | competence type IV pilus minor pilin ComGD | - |
| I5776_RS08260 (I5776_08255) | - | 1663532..1663870 (+) | 339 | WP_202780155.1 | hypothetical protein | - |
| I5776_RS08265 (I5776_08260) | comGF | 1663863..1664270 (+) | 408 | WP_202780736.1 | competence type IV pilus minor pilin ComGF | - |
| I5776_RS08270 (I5776_08265) | comGG | 1664274..1664648 (+) | 375 | WP_202780156.1 | competence type IV pilus minor pilin ComGG | - |
| I5776_RS08275 (I5776_08270) | - | 1664719..1664895 (+) | 177 | WP_202780157.1 | YqzE family protein | - |
| I5776_RS08280 (I5776_08275) | - | 1664943..1665737 (-) | 795 | WP_202780158.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 367 a.a. Molecular weight: 41839.44 Da Isoelectric Point: 9.7516
>NTDB_id=509443 I5776_RS08240 WP_202780151.1 1660694..1661797(+) (comGA) [Heyndrickxia vini strain JCM 19841]
MTIEKIVDLLLNQALKLNATDVHIIPRKDDYHVQLRFNGRLTPYRELSVEIGERLISHFKFMSSMDISEKRKPQSGSFHL
FVHQKKTSLRISTLPTALLKESLVIRILPQNQSVTINEISLFPTFTKKLKALLMHSHGMIIFTGPTGSGKSTTMYTLVEH
CSNQLRRNVITLEDPVEQQNGSFLQVQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDSETAKIAIRAALTGHLVLSTLH
TRDAKGAIYRLLEFGVQWHEIEQTLIAVTAQRLVKLKCPFCGNMCSTYCVNYFKKNRTAVYEMISGKTLKNVLSEANGNQ
TTTKYKTLKEIIRKGIALGYISTNEYYRWVFDEEESNPYQNPRNVFE
MTIEKIVDLLLNQALKLNATDVHIIPRKDDYHVQLRFNGRLTPYRELSVEIGERLISHFKFMSSMDISEKRKPQSGSFHL
FVHQKKTSLRISTLPTALLKESLVIRILPQNQSVTINEISLFPTFTKKLKALLMHSHGMIIFTGPTGSGKSTTMYTLVEH
CSNQLRRNVITLEDPVEQQNGSFLQVQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDSETAKIAIRAALTGHLVLSTLH
TRDAKGAIYRLLEFGVQWHEIEQTLIAVTAQRLVKLKCPFCGNMCSTYCVNYFKKNRTAVYEMISGKTLKNVLSEANGNQ
TTTKYKTLKEIIRKGIALGYISTNEYYRWVFDEEESNPYQNPRNVFE
Nucleotide
Download Length: 1104 bp
>NTDB_id=509443 I5776_RS08240 WP_202780151.1 1660694..1661797(+) (comGA) [Heyndrickxia vini strain JCM 19841]
ATGACAATAGAAAAAATAGTAGACTTATTGCTAAATCAGGCGTTGAAATTAAACGCAACGGATGTGCATATTATTCCGAG
AAAAGATGATTATCACGTCCAACTTCGTTTTAACGGAAGACTAACCCCGTACCGAGAACTATCCGTTGAAATTGGTGAAA
GACTCATATCCCATTTTAAATTTATGTCTTCCATGGATATTAGTGAAAAAAGAAAACCTCAAAGTGGCTCCTTCCATTTA
TTTGTCCATCAAAAGAAAACGTCTTTACGAATTTCTACCTTACCAACAGCATTATTAAAAGAAAGTTTAGTTATACGGAT
TTTACCTCAAAATCAATCGGTAACCATCAATGAAATTTCCCTATTTCCCACATTCACAAAAAAACTAAAAGCTTTGTTAA
TGCACTCGCACGGAATGATCATTTTCACTGGTCCAACTGGCAGCGGTAAATCAACGACGATGTATACGCTTGTAGAGCAT
TGTTCTAATCAATTGAGGAGGAATGTGATAACACTCGAAGATCCTGTGGAACAGCAGAATGGGTCATTTTTACAAGTTCA
AGTGAATGAAAAAGCAGGTATAACGTATAGCACCGGATTGAAAGCTATTTTAAGACATGATCCCGATATTATTATGGTAG
GCGAAATCCGTGATAGTGAAACGGCGAAAATTGCTATAAGAGCGGCATTAACAGGACATTTAGTACTTAGTACATTGCAT
ACAAGAGATGCGAAAGGAGCAATTTATCGATTATTAGAATTTGGGGTGCAATGGCACGAAATTGAACAAACATTAATTGC
TGTAACCGCGCAAAGGCTAGTAAAATTGAAATGCCCATTTTGTGGTAACATGTGTTCAACATATTGTGTGAATTATTTTA
AGAAAAACAGAACAGCCGTATATGAGATGATTTCAGGAAAGACATTGAAAAATGTATTAAGTGAAGCGAATGGAAATCAG
ACAACGACTAAATATAAAACATTGAAAGAGATCATTCGAAAGGGGATTGCACTTGGATATATTTCAACAAATGAATACTA
TCGGTGGGTTTTTGATGAAGAAGAATCGAATCCCTATCAAAACCCAAGGAATGTTTTTGAGTAG
ATGACAATAGAAAAAATAGTAGACTTATTGCTAAATCAGGCGTTGAAATTAAACGCAACGGATGTGCATATTATTCCGAG
AAAAGATGATTATCACGTCCAACTTCGTTTTAACGGAAGACTAACCCCGTACCGAGAACTATCCGTTGAAATTGGTGAAA
GACTCATATCCCATTTTAAATTTATGTCTTCCATGGATATTAGTGAAAAAAGAAAACCTCAAAGTGGCTCCTTCCATTTA
TTTGTCCATCAAAAGAAAACGTCTTTACGAATTTCTACCTTACCAACAGCATTATTAAAAGAAAGTTTAGTTATACGGAT
TTTACCTCAAAATCAATCGGTAACCATCAATGAAATTTCCCTATTTCCCACATTCACAAAAAAACTAAAAGCTTTGTTAA
TGCACTCGCACGGAATGATCATTTTCACTGGTCCAACTGGCAGCGGTAAATCAACGACGATGTATACGCTTGTAGAGCAT
TGTTCTAATCAATTGAGGAGGAATGTGATAACACTCGAAGATCCTGTGGAACAGCAGAATGGGTCATTTTTACAAGTTCA
AGTGAATGAAAAAGCAGGTATAACGTATAGCACCGGATTGAAAGCTATTTTAAGACATGATCCCGATATTATTATGGTAG
GCGAAATCCGTGATAGTGAAACGGCGAAAATTGCTATAAGAGCGGCATTAACAGGACATTTAGTACTTAGTACATTGCAT
ACAAGAGATGCGAAAGGAGCAATTTATCGATTATTAGAATTTGGGGTGCAATGGCACGAAATTGAACAAACATTAATTGC
TGTAACCGCGCAAAGGCTAGTAAAATTGAAATGCCCATTTTGTGGTAACATGTGTTCAACATATTGTGTGAATTATTTTA
AGAAAAACAGAACAGCCGTATATGAGATGATTTCAGGAAAGACATTGAAAAATGTATTAAGTGAAGCGAATGGAAATCAG
ACAACGACTAAATATAAAACATTGAAAGAGATCATTCGAAAGGGGATTGCACTTGGATATATTTCAACAAATGAATACTA
TCGGTGGGTTTTTGATGAAGAAGAATCGAATCCCTATCAAAACCCAAGGAATGTTTTTGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
56.62 |
96.73 |
0.548 |
| pilB | Haemophilus influenzae 86-028NP |
39.481 |
94.55 |
0.373 |