Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   I5818_RS17405 Genome accession   NZ_CP065424
Coordinates   3488712..3489659 (-) Length   315 a.a.
NCBI ID   WP_058004797.1    Uniprot ID   A0A8E2I3L8
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3483712..3494659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5818_RS17380 (I5818_17390) - 3484499..3485290 (-) 792 WP_079991289.1 DUF2268 domain-containing protein -
  I5818_RS17385 (I5818_17395) fabF 3485483..3486718 (-) 1236 WP_071976850.1 beta-ketoacyl-ACP synthase II -
  I5818_RS17390 (I5818_17400) - 3486858..3487796 (-) 939 WP_058004800.1 beta-ketoacyl-ACP synthase III -
  I5818_RS17395 (I5818_17405) - 3488058..3488375 (+) 318 WP_058004799.1 hypothetical protein -
  I5818_RS17400 (I5818_17410) comZ 3488502..3488684 (-) 183 WP_058004798.1 ComZ family protein Regulator
  I5818_RS17405 (I5818_17415) med 3488712..3489659 (-) 948 WP_058004797.1 BMP family ABC transporter substrate-binding protein Regulator
  I5818_RS17410 (I5818_17420) - 3489772..3490563 (-) 792 WP_071976848.1 hypothetical protein -
  I5818_RS17415 (I5818_17425) - 3490694..3491410 (-) 717 WP_071976847.1 alpha/beta fold hydrolase -
  I5818_RS17420 (I5818_17430) - 3491669..3491851 (+) 183 WP_058004794.1 YjzD family protein -
  I5818_RS17425 (I5818_17435) clpB 3491960..3494557 (-) 2598 WP_078110108.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35261.39 Da        Isoelectric Point: 7.8955

>NTDB_id=509402 I5818_RS17405 WP_058004797.1 3488712..3489659(-) (med) [Heyndrickxia oleronia strain DSM 9356]
MIKKLFIIIACILLLSSCSNRVDKGKLNKVGMLVPETINDQVWGTKGYKGLLNIQNDFDVDVYYKEGIENASAIEHAVSE
FKQKNVNLIFGHGFEYADTFNKIAKKYPTIHFVSFNGDATQKNTTSLRFEGHAMGFFGGMTAAHMSTTKKIGIIATHSWQ
PEIKGFVEGAKYEDPNITVLLKYTDNWDDGQKAVGLLDKLLDEEVDVVYPAGDGFNVPVIEKIKEKGLYAIGYVSDQSDL
GKNTVLTSTIQQASKLYDIVAKKYAEGTLQSGNLSFDFQDGVIEMGKFSPRVDEKFQRKMKRFVKKYKETGDLPK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=509402 I5818_RS17405 WP_058004797.1 3488712..3489659(-) (med) [Heyndrickxia oleronia strain DSM 9356]
ATGATAAAAAAGTTATTCATTATCATTGCCTGTATATTACTTTTATCAAGTTGCTCAAATAGGGTTGATAAAGGTAAACT
TAACAAGGTAGGAATGTTAGTACCTGAAACAATCAATGATCAAGTCTGGGGAACAAAAGGGTATAAGGGTCTGTTGAATA
TCCAAAATGACTTTGATGTCGATGTCTATTATAAAGAAGGAATTGAAAACGCATCTGCCATCGAACATGCAGTCAGTGAA
TTTAAACAAAAAAATGTAAATTTAATTTTTGGTCATGGATTTGAGTATGCGGATACGTTTAATAAAATTGCTAAAAAATA
TCCTACTATTCATTTCGTTAGCTTCAATGGGGATGCAACACAAAAAAATACAACTAGTTTAAGATTTGAAGGCCATGCAA
TGGGTTTTTTTGGTGGGATGACGGCAGCACATATGTCAACCACAAAAAAAATAGGTATTATTGCAACACATAGTTGGCAG
CCGGAAATTAAAGGATTTGTTGAAGGCGCAAAATATGAGGATCCAAATATTACCGTCTTATTAAAGTATACTGATAATTG
GGATGATGGACAAAAAGCTGTAGGGCTTTTGGACAAATTATTAGATGAAGAAGTAGATGTGGTATACCCAGCTGGCGATG
GCTTTAATGTACCGGTCATTGAAAAAATTAAAGAAAAAGGTCTATATGCAATAGGCTATGTTTCAGATCAATCGGATTTA
GGGAAAAATACAGTTCTAACAAGTACGATTCAACAAGCAAGTAAGCTTTATGATATTGTCGCAAAAAAATATGCAGAGGG
TACTCTCCAATCAGGGAATCTTTCATTTGACTTCCAAGATGGTGTAATAGAAATGGGGAAATTCAGTCCCCGGGTTGACG
AAAAATTTCAAAGGAAAATGAAACGTTTTGTCAAAAAATATAAAGAAACAGGAGACTTACCAAAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

56.825

100

0.568