Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   I5818_RS08830 Genome accession   NZ_CP065424
Coordinates   1769821..1772190 (+) Length   789 a.a.
NCBI ID   WP_078110907.1    Uniprot ID   A0A8E2I8M5
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1764821..1777190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5818_RS08810 (I5818_08805) secDF 1764989..1767250 (+) 2262 WP_209391893.1 protein translocase subunit SecDF -
  I5818_RS08815 (I5818_08810) - 1767587..1768303 (+) 717 WP_078110909.1 SDR family oxidoreductase -
  I5818_RS08820 (I5818_08815) - 1768275..1769339 (+) 1065 WP_235849756.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  I5818_RS08825 (I5818_08820) - 1769362..1769721 (+) 360 WP_169846952.1 VOC family protein -
  I5818_RS08830 (I5818_08825) recJ 1769821..1772190 (+) 2370 WP_078110907.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  I5818_RS08835 (I5818_08830) - 1772181..1772693 (+) 513 WP_078110906.1 adenine phosphoribosyltransferase -
  I5818_RS08840 (I5818_08835) - 1773331..1775520 (+) 2190 WP_058002067.1 RelA/SpoT family protein -
  I5818_RS08845 (I5818_08840) dtd 1775608..1776045 (+) 438 WP_058002068.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89152.09 Da        Isoelectric Point: 5.1495

>NTDB_id=509378 I5818_RS08830 WP_078110907.1 1769821..1772190(+) (recJ) [Heyndrickxia oleronia strain DSM 9356]
MLKSKTRWVVRDTDQNAVKQLVNHLNITPLVATLLVNRGIEKIEDAKSFLYGESESFHDPYLLYGMEEAVDRIRLAIKNK
EQILIYGDYDADGVSSTSVMMTVLNDLDANVDFYIPNRFTEGYGPNEEAFRYAASIGIDLIITVDTGIAAVHEADIAKEL
GMDLIITDHHEPGPILPQALSIVHPKHPESHYPFKELAGVGVAFKVAHALYGKIPEHLLDIVSIGTIADLVPLRGENRLI
VKNGLKRLVKTENKGLQALFELTNTKQSDINEETVGFVIGPRLNAAGRLDSADPAVELLLTNDKIAAENIAQEIDAMNKE
RQSIVNEITKEAIAMVEDNMELKESHVLVIGKEGWNAGVIGIVASRLVEKFYRPTIVLSFDPSTNLAKGSARSIVGFDLF
KSLSACRDILPHFGGHPMAAGMTLKIDDVSQLRSRLHEIAKDVLTEEDFVPITEIDACIPIEDIHLEAIEQLNLLEPYGM
SNPKPKVLVQDLSISQIRQIGADNKHLKVIFEKSGVHLDGVGFGLGEYSMQISPLASVSAIGELAVNEWNNIRKPQIFIK
DMMIEEWQLFDVRGHKPLKKWIQQVPMDNSIFIVFHEDNIKELQKSEFNGTIVHLEDISQAQSLNINGGNIILLDLPPSK
EILESLINNKQPSRVYTYFYHKEEHFFSTLPTREHFKWFYAFLRKRGTFDLNRFGNDLASHRGWTRETVDFMSQVFFELE
FVTIKNGLITIHPVKSKRDLLESSTYQEKLAKMTLENELLFSSYQELKKWFDERMIGLQDVEEETKQWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=509378 I5818_RS08830 WP_078110907.1 1769821..1772190(+) (recJ) [Heyndrickxia oleronia strain DSM 9356]
ATGTTAAAGTCAAAAACACGATGGGTCGTGCGAGATACAGATCAAAATGCTGTGAAACAACTCGTAAATCATTTAAACAT
AACTCCACTCGTAGCTACTCTATTAGTGAATCGTGGAATTGAAAAAATTGAAGATGCTAAATCCTTTTTATATGGTGAAA
GTGAATCCTTTCATGACCCATATCTGCTTTATGGGATGGAAGAGGCAGTTGATAGAATACGCTTAGCTATAAAAAATAAA
GAACAAATATTAATTTATGGAGATTATGATGCAGATGGTGTAAGTAGTACATCTGTCATGATGACCGTATTAAATGATTT
AGATGCCAATGTGGATTTTTACATACCCAATCGTTTTACCGAAGGTTATGGTCCAAATGAAGAGGCATTTCGCTATGCAG
CATCCATTGGAATTGATTTAATTATTACAGTTGATACCGGTATAGCAGCTGTACATGAAGCGGATATTGCCAAAGAGCTA
GGAATGGATTTAATTATAACCGATCATCATGAACCGGGTCCTATTCTACCTCAGGCATTGTCAATTGTGCACCCGAAACA
CCCGGAAAGTCATTACCCGTTTAAAGAATTAGCAGGTGTAGGGGTTGCATTTAAAGTAGCTCATGCATTATATGGAAAAA
TTCCCGAACATTTACTAGATATTGTATCGATTGGAACTATTGCCGATTTAGTTCCATTACGTGGAGAAAATCGCCTTATT
GTAAAAAATGGCCTTAAAAGATTAGTTAAAACTGAGAATAAAGGACTCCAAGCGCTGTTCGAGCTAACAAATACTAAACA
ATCAGATATTAATGAAGAGACAGTGGGGTTTGTTATTGGTCCAAGGTTAAATGCAGCTGGCAGGCTGGACAGTGCAGACC
CTGCTGTAGAACTGTTACTTACTAACGATAAAATAGCAGCCGAAAATATTGCCCAAGAAATTGATGCAATGAATAAAGAA
CGCCAATCTATCGTCAATGAGATAACTAAAGAAGCCATTGCTATGGTGGAAGATAACATGGAATTAAAAGAAAGCCATGT
ACTTGTAATAGGTAAAGAGGGATGGAATGCAGGTGTAATTGGTATTGTTGCATCGAGGCTAGTAGAAAAATTTTATCGCC
CTACTATTGTTTTGAGTTTCGATCCTTCAACAAATTTGGCTAAAGGATCTGCTCGTAGTATTGTTGGTTTTGATTTATTT
AAAAGCTTATCAGCATGCAGGGATATTCTCCCTCATTTTGGAGGTCATCCAATGGCTGCTGGTATGACCTTGAAAATTGA
TGATGTTTCTCAACTAAGAAGTCGATTACATGAAATAGCTAAAGATGTATTAACAGAGGAAGATTTTGTTCCTATTACTG
AAATTGATGCGTGTATTCCCATTGAGGATATCCATCTTGAAGCAATTGAACAATTAAATTTACTAGAACCTTATGGGATG
TCTAATCCGAAGCCAAAAGTGTTAGTACAAGACTTATCTATTTCACAAATACGTCAAATAGGTGCTGACAATAAGCATTT
GAAGGTAATATTTGAAAAGTCAGGAGTTCATTTGGATGGAGTCGGTTTTGGGTTAGGTGAATACTCCATGCAAATTTCCC
CGCTTGCATCTGTTTCTGCTATTGGTGAACTTGCAGTAAATGAATGGAATAATATTAGAAAACCACAAATCTTTATCAAA
GATATGATGATTGAAGAATGGCAACTTTTTGATGTAAGAGGACATAAACCTCTAAAAAAGTGGATTCAGCAAGTACCTAT
GGATAATAGTATATTTATTGTATTTCATGAAGATAACATTAAAGAACTTCAAAAATCAGAATTTAATGGTACAATCGTCC
ACTTGGAGGATATTTCACAAGCACAGTCTTTAAACATTAATGGTGGAAATATTATACTATTAGATCTTCCTCCTTCAAAA
GAGATACTAGAATCATTGATAAACAACAAACAACCATCGAGGGTCTACACTTATTTTTATCATAAAGAAGAACATTTCTT
TAGTACTTTACCAACTAGAGAACATTTTAAATGGTTTTATGCGTTTTTAAGAAAACGGGGGACATTTGATTTAAATCGCT
TTGGGAATGATTTAGCAAGTCACCGTGGTTGGACAAGAGAAACGGTTGACTTTATGTCACAGGTGTTTTTTGAACTAGAA
TTTGTTACAATAAAGAATGGGTTAATTACAATTCATCCAGTTAAATCGAAAAGAGATTTATTGGAATCATCCACATATCA
AGAAAAATTAGCAAAAATGACATTAGAAAATGAATTATTATTTTCATCCTATCAAGAATTAAAAAAATGGTTTGATGAAA
GAATGATTGGTTTGCAAGATGTTGAGGAGGAAACAAAGCAATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.113

99.747

0.53