Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST1A_RS07640 Genome accession   NZ_CP065384
Coordinates   1487085..1488122 (-) Length   345 a.a.
NCBI ID   WP_046206495.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 1A     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1482085..1493122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST1A_RS07615 (ST1A_07570) ilvD 1482352..1484055 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  ST1A_RS07620 (ST1A_07575) - 1484183..1485364 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST1A_RS07630 (ST1A_07585) trmB 1485585..1486226 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST1A_RS07635 (ST1A_07590) - 1486236..1487027 (-) 792 WP_002951667.1 phosphotransferase family protein -
  ST1A_RS07640 (ST1A_07595) pptB 1487085..1488122 (-) 1038 WP_046206495.1 ABC transporter permease Regulator
  ST1A_RS07645 (ST1A_07600) pptA 1488119..1488850 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST1A_RS07650 (ST1A_07605) - 1488915..1489334 (+) 420 WP_011681530.1 HIT family protein -
  ST1A_RS07655 (ST1A_07610) - 1489331..1489630 (+) 300 WP_011681531.1 hypothetical protein -
  ST1A_RS07660 (ST1A_07615) - 1489682..1490359 (-) 678 WP_011681532.1 hypothetical protein -
  ST1A_RS07665 (ST1A_07620) - 1490429..1491064 (-) 636 WP_011681533.1 DUF4230 domain-containing protein -
  ST1A_RS07670 - 1491083..1491208 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40168.71 Da        Isoelectric Point: 10.6158

>NTDB_id=509103 ST1A_RS07640 WP_046206495.1 1487085..1488122(-) (pptB) [Streptococcus thermophilus strain 1A]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTVLKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=509103 ST1A_RS07640 WP_046206495.1 1487085..1488122(-) (pptB) [Streptococcus thermophilus strain 1A]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAG
ATTTTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGATTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAC
ATACGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGTGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

99.71

0.983

  pptB Streptococcus salivarius strain HSISS4

93.023

99.71

0.928