Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ST1A_RS05440 Genome accession   NZ_CP065384
Coordinates   1045302..1046114 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain 1A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040302..1051114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST1A_RS05415 (ST1A_05395) - 1041240..1041626 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  ST1A_RS05420 (ST1A_05400) - 1041684..1042596 (-) 913 Protein_1012 GNAT family N-acetyltransferase -
  ST1A_RS05425 (ST1A_05405) yidA 1042804..1043613 (+) 810 WP_011226081.1 sugar-phosphatase -
  ST1A_RS05430 (ST1A_05410) - 1043615..1044829 (+) 1215 WP_002953123.1 aminoacyltransferase -
  ST1A_RS05435 (ST1A_05415) - 1044881..1045242 (-) 362 Protein_1015 YbaN family protein -
  ST1A_RS05440 (ST1A_05420) vicX 1045302..1046114 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  ST1A_RS05445 (ST1A_05425) vicK 1046120..1047460 (-) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ST1A_RS05450 (ST1A_05430) vicR 1047453..1048160 (-) 708 WP_011681206.1 response regulator YycF Regulator
  ST1A_RS05455 (ST1A_05435) - 1048684..1049451 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  ST1A_RS05460 (ST1A_05440) - 1049463..1050296 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  ST1A_RS05465 (ST1A_05445) - 1050314..1051012 (+) 699 WP_011681209.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=509089 ST1A_RS05440 WP_011681204.1 1045302..1046114(-) (vicX) [Streptococcus thermophilus strain 1A]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=509089 ST1A_RS05440 WP_011681204.1 1045302..1046114(-) (vicX) [Streptococcus thermophilus strain 1A]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774