Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   DGO_RS21535 Genome accession   NC_017790
Coordinates   241014..241481 (-) Length   155 a.a.
NCBI ID   WP_145975219.1    Uniprot ID   -
Organism   Deinococcus gobiensis I-0     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 236014..246481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS01195 (DGo_CA0232) - 236556..237002 (-) 447 WP_043800483.1 hypothetical protein -
  DGO_RS01200 (DGo_CA0233) - 237142..237846 (+) 705 WP_014683643.1 IclR family transcriptional regulator -
  DGO_RS01205 (DGo_CA0234) - 237862..239562 (-) 1701 WP_014683644.1 dynamin family protein -
  DGO_RS21525 (DGo_CA0235) - 239626..240471 (-) 846 WP_014683645.1 PilW family protein -
  DGO_RS21530 (DGo_CA0236) - 240468..241013 (-) 546 WP_145975218.1 PulJ/GspJ family protein -
  DGO_RS21535 (DGo_CA0237) pilV 241014..241481 (-) 468 WP_145975219.1 type II secretion system protein Machinery gene
  DGO_RS23120 (DGo_CA0238) - 241478..243673 (-) 2196 WP_145975220.1 hypothetical protein -
  DGO_RS01210 (DGo_CA0239) - 243868..245184 (+) 1317 WP_043800485.1 thymidine phosphorylase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16335.93 Da        Isoelectric Point: 10.6954

>NTDB_id=50899 DGO_RS21535 WP_145975219.1 241014..241481(-) (pilV) [Deinococcus gobiensis I-0]
MKRRLGQEAFTLLEILVVLSVIAILMVILSWGIIRSIRSAELREAASQVATDLRRARSQSQRGSADVVLVLPGSSGNTSY
KVDTVNKTLPGNVQLIFKGSSGGATTNVTYQAPYGELSGAVGSVYTVRSPMSGIGDLEIRIVGVTGKVILTKAGS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=50899 DGO_RS21535 WP_145975219.1 241014..241481(-) (pilV) [Deinococcus gobiensis I-0]
GTGAAGCGTAGGCTCGGCCAAGAGGCATTCACCCTTCTTGAAATCCTGGTCGTCTTGTCAGTTATTGCCATCCTTATGGT
TATCCTCAGTTGGGGGATTATCCGGAGTATACGTTCGGCTGAGCTTCGGGAAGCCGCCTCACAGGTGGCGACCGACCTGC
GTAGAGCACGTTCGCAATCTCAGCGTGGCAGCGCAGACGTTGTGCTGGTCTTACCCGGCAGCAGCGGCAACACTTCTTAT
AAAGTTGATACGGTTAATAAAACGTTACCTGGGAACGTACAGCTCATTTTCAAAGGTTCAAGTGGCGGTGCGACCACCAA
TGTCACCTATCAAGCACCATATGGTGAACTTTCTGGGGCAGTCGGAAGTGTCTATACAGTCAGGAGTCCTATGAGCGGAA
TCGGTGACCTTGAAATTAGAATCGTCGGCGTGACGGGAAAGGTCATTCTGACAAAGGCAGGATCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

69.231

100

0.697

Multiple sequence alignment