Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KU510_RS06920 Genome accession   NZ_CP077861
Coordinates   1374995..1376107 (+) Length   370 a.a.
NCBI ID   WP_000775117.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 372     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1369995..1381107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU510_RS06895 (KU510_06855) rnpA 1370258..1370611 (-) 354 WP_001789343.1 ribonuclease P protein component -
  KU510_RS06900 (KU510_06860) rpmH 1370732..1370869 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  KU510_RS06905 (KU510_06865) dnaA 1371600..1372961 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  KU510_RS06910 (KU510_06870) dnaN 1373239..1374372 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  KU510_RS06915 (KU510_06875) yaaA 1374753..1374998 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  KU510_RS06920 (KU510_06880) recF 1374995..1376107 (+) 1113 WP_000775117.1 DNA replication/repair protein RecF Machinery gene
  KU510_RS06925 (KU510_06885) gyrB 1376117..1378051 (+) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KU510_RS06930 (KU510_06890) gyrA 1378088..1380628 (+) 2541 WP_225805698.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42431.43 Da        Isoelectric Point: 6.4359

>NTDB_id=508878 KU510_RS06920 WP_000775117.1 1374995..1376107(+) (recF) [Staphylococcus aureus strain 372]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYTQNEAAR
LEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=508878 KU510_RS06920 WP_000775117.1 1374995..1376107(+) (recF) [Staphylococcus aureus strain 372]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGACTAACCCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATACTCAAAATGAAGCGGCACGA
CTTGAAGATATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTATATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

48.525

100

0.489