Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   I5M77_RS00020 Genome accession   NZ_CP065369
Coordinates   6169..6783 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082A3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169..11783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5M77_RS00010 (I5M77_00010) aceF 2458..4344 (+) 1887 WP_025792849.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  I5M77_RS00015 (I5M77_00015) lpdA 4614..6041 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  I5M77_RS00020 (I5M77_00020) opaR 6169..6783 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  I5M77_RS00025 (I5M77_00025) hpt 7102..7632 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  I5M77_RS00030 (I5M77_00030) can 7707..8375 (-) 669 WP_005462578.1 carbonate dehydratase -
  I5M77_RS00035 (I5M77_00035) - 8659..10329 (+) 1671 WP_025792850.1 SulP family inorganic anion transporter -
  I5M77_RS00040 (I5M77_00040) - 10583..11500 (+) 918 WP_024702450.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=508867 I5M77_RS00020 WP_005479697.1 6169..6783(-) (opaR) [Vibrio parahaemolyticus strain 20-082A3]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=508867 I5M77_RS00020 WP_005479697.1 6169..6783(-) (opaR) [Vibrio parahaemolyticus strain 20-082A3]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAGCATGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701