Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I5Q61_RS03475 Genome accession   NZ_CP065357
Coordinates   697804..698577 (-) Length   257 a.a.
NCBI ID   WP_124133904.1    Uniprot ID   A0A424Z1C7
Organism   Campylobacter hepaticus strain UF2019SK1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 692804..703577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Q61_RS03445 (I5Q61_03445) aspS 692995..694746 (+) 1752 WP_196914034.1 aspartate--tRNA ligase -
  I5Q61_RS03450 (I5Q61_03450) - 694743..695318 (+) 576 WP_066776668.1 adenylate kinase -
  I5Q61_RS03455 (I5Q61_03455) ppa 695329..695847 (+) 519 WP_066776666.1 inorganic diphosphatase -
  I5Q61_RS03460 (I5Q61_03460) msrA 695891..696394 (+) 504 WP_066776663.1 peptide-methionine (S)-S-oxide reductase MsrA -
  I5Q61_RS03465 (I5Q61_03465) - 696556..697434 (-) 879 WP_066776660.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  I5Q61_RS03470 (I5Q61_03470) ruvX 697424..697807 (-) 384 WP_066776657.1 Holliday junction resolvase RuvX -
  I5Q61_RS03475 (I5Q61_03475) dprA 697804..698577 (-) 774 WP_124133904.1 DNA-processing protein DprA Machinery gene
  I5Q61_RS03480 (I5Q61_03480) - 698567..699637 (-) 1071 WP_066776653.1 divergent polysaccharide deacetylase family protein -
  I5Q61_RS03485 (I5Q61_03485) ilvC 699641..700663 (-) 1023 WP_066776649.1 ketol-acid reductoisomerase -
  I5Q61_RS03490 (I5Q61_03490) - 700782..702719 (+) 1938 WP_124134055.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29096.17 Da        Isoelectric Point: 9.3193

>NTDB_id=508822 I5Q61_RS03475 WP_124133904.1 697804..698577(-) (dprA) [Campylobacter hepaticus strain UF2019SK1]
MVSKILDCEFLEYFKNLQKPPKKLYYKGNLSLLKQDKIAIIGSRRMNVYTKNCVFSLASMLKNANICIVSGGALGVDITA
SMAAMPNTIGIFANGLGQIYPKTNEKIIKQIYQNALALSENEDNYVPKNYDFLFRNRLIIALSKVVVIAQADIKSGSMQS
ARLALELNKPLYVLPQRLHESMGTNLLLKENKAKLIYDLRDFVDEFAPLNMQKDEFLEFCQKGVSVDEALKIFGEKVYQY
ELEGKISIEGLFIRVLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=508822 I5Q61_RS03475 WP_124133904.1 697804..698577(-) (dprA) [Campylobacter hepaticus strain UF2019SK1]
ATGGTAAGTAAAATTTTAGATTGTGAATTTTTAGAATATTTTAAAAATTTACAAAAACCACCTAAAAAATTATATTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAGATTGCTATTATAGGATCTAGACGCATGAATGTTTATACAAAAAATTGTG
TTTTTTCTTTAGCTAGTATGCTTAAAAATGCTAATATTTGTATAGTTAGTGGAGGTGCTTTAGGTGTAGATATTACAGCA
AGTATGGCAGCTATGCCTAATACTATAGGTATTTTTGCTAATGGTTTGGGACAAATTTATCCTAAAACAAATGAAAAAAT
AATCAAGCAAATTTATCAAAATGCTTTGGCTTTGAGTGAAAATGAGGATAATTATGTGCCTAAAAATTATGATTTTTTAT
TTAGAAATCGTTTGATTATTGCTTTGAGTAAAGTTGTTGTTATAGCACAAGCTGATATAAAAAGTGGATCTATGCAAAGT
GCTAGACTTGCTTTAGAATTAAATAAACCTTTATATGTTTTGCCTCAAAGACTTCATGAAAGCATGGGAACTAATTTACT
TTTGAAAGAAAATAAAGCAAAATTGATTTATGATTTAAGAGATTTTGTGGATGAGTTTGCACCTTTGAATATGCAAAAAG
ATGAATTTTTAGAGTTTTGTCAAAAAGGTGTAAGTGTAGATGAGGCCTTAAAAATTTTTGGTGAAAAAGTTTATCAATAT
GAACTTGAAGGAAAAATTTCTATAGAAGGTCTTTTTATAAGGGTGTTAAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z1C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

84.375

99.611

0.84
  dprA Helicobacter pylori 26695

49.583

93.385

0.463