Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I5046_RS07155 Genome accession   NZ_CP065355
Coordinates   1528421..1528867 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW31330_O1_dhc     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523421..1533867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5046_RS07125 (I5046_07125) gcvPA 1524347..1525693 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I5046_RS07130 (I5046_07130) gcvT 1525713..1526804 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  I5046_RS07135 (I5046_07135) - 1526963..1527487 (-) 525 WP_001015120.1 shikimate kinase -
  I5046_RS07140 (I5046_07140) - 1527477..1527623 (-) 147 WP_001789879.1 hypothetical protein -
  I5046_RS07145 (I5046_07145) comGF 1527720..1528217 (-) 498 WP_029693246.1 competence type IV pilus minor pilin ComGF Machinery gene
  I5046_RS07150 (I5046_07150) comGE 1528135..1528434 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  I5046_RS07155 (I5046_07155) comGD 1528421..1528867 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  I5046_RS07160 (I5046_07160) comGC 1528845..1529156 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  I5046_RS07165 (I5046_07165) comGB 1529170..1530240 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  I5046_RS07170 (I5046_07170) comGA 1530212..1531186 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  I5046_RS07175 (I5046_07175) - 1531238..1531861 (-) 624 WP_123138722.1 MBL fold metallo-hydrolase -
  I5046_RS07180 (I5046_07180) - 1531858..1532187 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  I5046_RS07185 (I5046_07185) - 1532187..1533173 (-) 987 WP_000161315.1 ROK family glucokinase -
  I5046_RS07190 (I5046_07190) - 1533170..1533373 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=508787 I5046_RS07155 WP_001796473.1 1528421..1528867(-) (comGD) [Staphylococcus aureus strain JW31330_O1_dhc]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=508787 I5046_RS07155 WP_001796473.1 1528421..1528867(-) (comGD) [Staphylococcus aureus strain JW31330_O1_dhc]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAGGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993