Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I5044_RS07485 Genome accession   NZ_CP065354
Coordinates   1588688..1589374 (-) Length   228 a.a.
NCBI ID   WP_078064551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW_comp_novo     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583688..1594374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5044_RS07465 (I5044_07465) rpsT 1584602..1584853 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  I5044_RS07470 (I5044_07470) holA 1584898..1585872 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  I5044_RS07475 (I5044_07475) - 1585929..1588130 (-) 2202 Protein_1472 DNA internalization-related competence protein ComEC/Rec2 -
  I5044_RS07480 (I5044_07480) - 1588135..1588596 (-) 462 WP_000439693.1 ComE operon protein 2 -
  I5044_RS07485 (I5044_07485) comEA 1588688..1589374 (-) 687 WP_078064551.1 ComEA family DNA-binding protein Machinery gene
  I5044_RS07490 (I5044_07490) - 1589414..1590130 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  I5044_RS07495 (I5044_07495) rsfS 1590133..1590486 (-) 354 WP_001088020.1 ribosome silencing factor -
  I5044_RS07500 (I5044_07500) yqeK 1590487..1591071 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I5044_RS07505 (I5044_07505) nadD 1591061..1591630 (-) 570 WP_000725166.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  I5044_RS07510 (I5044_07510) yhbY 1591633..1591923 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  I5044_RS07515 (I5044_07515) aroE 1591927..1592733 (-) 807 WP_000666745.1 shikimate dehydrogenase -
  I5044_RS07520 (I5044_07520) yqeH 1592747..1593847 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=508751 I5044_RS07485 WP_078064551.1 1588688..1589374(-) (comEA) [Staphylococcus aureus strain JW_comp_novo]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=508751 I5044_RS07485 WP_078064551.1 1588688..1589374(-) (comEA) [Staphylococcus aureus strain JW_comp_novo]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.684

100

0.987
  comEA Staphylococcus aureus N315

98.684

100

0.987