Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I5043_RS07345 Genome accession   NZ_CP065353
Coordinates   1567948..1568634 (-) Length   228 a.a.
NCBI ID   WP_078370367.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR39_O1_merpol     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562948..1573634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5043_RS07325 (I5043_07325) rpsT 1563862..1564113 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  I5043_RS07330 (I5043_07330) holA 1564158..1565132 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  I5043_RS07335 (I5043_07335) comEC 1565189..1567390 (-) 2202 WP_041204299.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I5043_RS07340 (I5043_07340) - 1567395..1567856 (-) 462 WP_000439693.1 ComE operon protein 2 -
  I5043_RS07345 (I5043_07345) comEA 1567948..1568634 (-) 687 WP_078370367.1 ComEA family DNA-binding protein Machinery gene
  I5043_RS07350 (I5043_07350) - 1568674..1569390 (-) 717 WP_196931708.1 class I SAM-dependent DNA methyltransferase -
  I5043_RS07355 (I5043_07355) rsfS 1569393..1569746 (-) 354 WP_001088020.1 ribosome silencing factor -
  I5043_RS07360 (I5043_07360) yqeK 1569747..1570331 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I5043_RS07365 (I5043_07365) nadD 1570321..1570890 (-) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  I5043_RS07370 (I5043_07370) yhbY 1570893..1571183 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  I5043_RS07375 (I5043_07375) aroE 1571187..1571993 (-) 807 WP_000666764.1 shikimate dehydrogenase -
  I5043_RS07380 (I5043_07380) yqeH 1572007..1573107 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25691.46 Da        Isoelectric Point: 9.5413

>NTDB_id=508710 I5043_RS07345 WP_078370367.1 1567948..1568634(-) (comEA) [Staphylococcus aureus strain AR39_O1_merpol]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=508710 I5043_RS07345 WP_078370367.1 1567948..1568634(-) (comEA) [Staphylococcus aureus strain AR39_O1_merpol]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969
  comEA Staphylococcus aureus N315

97.357

99.561

0.969