Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SAIN_RS00205 Genome accession   NC_022244
Coordinates   27915..28688 (+) Length   257 a.a.
NCBI ID   WP_021001142.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22915..33688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS00185 (SAIN_0038) mreD 23661..24161 (+) 501 WP_021001140.1 rod shape-determining protein MreD -
  SAIN_RS00190 (SAIN_0039) pcsB 24271..25497 (+) 1227 WP_003027163.1 peptidoglycan hydrolase PcsB -
  SAIN_RS00195 (SAIN_0040) - 25630..26598 (+) 969 WP_003032055.1 ribose-phosphate diphosphokinase -
  SAIN_RS00200 (SAIN_0041) - 26750..27937 (+) 1188 WP_021001141.1 pyridoxal phosphate-dependent aminotransferase -
  SAIN_RS00205 (SAIN_0042) recO 27915..28688 (+) 774 WP_021001142.1 DNA repair protein RecO Machinery gene
  SAIN_RS00210 (SAIN_0043) plsX 28685..29683 (+) 999 WP_021001143.1 phosphate acyltransferase PlsX -
  SAIN_RS00215 (SAIN_0044) - 29680..29925 (+) 246 WP_003027168.1 acyl carrier protein -
  SAIN_RS00220 (SAIN_0045) purC 30083..30790 (+) 708 WP_021001144.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29999.39 Da        Isoelectric Point: 6.0890

>NTDB_id=50842 SAIN_RS00205 WP_021001142.1 27915..28688(+) (recO) [Streptococcus anginosus C1051]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRVG
LPFDFSFTYNGVLCSEHYNKDERRSHLDPNIPYLLDQFQAIQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=50842 SAIN_RS00205 WP_021001142.1 27915..28688(+) (recO) [Streptococcus anginosus C1051]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAACTGGTCAAAATTTT
CACAGAGCAAGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTGTCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTACAATGGCTTATGCAACTTATGTGGTAGCTCTGGCAGACGCCAGTATTCAGGATAATAA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGAATTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGA
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCTCGGAACATTACAACAAAGACGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGATTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCAAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAATAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747

Multiple sequence alignment