Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGFG_RS11555 Genome accession   NC_022240
Coordinates   2123867..2124289 (-) Length   140 a.a.
NCBI ID   WP_080229175.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118867..2129289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS11520 (NGFG_00006) - 2119443..2119745 (-) 303 WP_003694607.1 hypothetical protein -
  NGFG_RS11525 (NGFG_00007) - 2119773..2120003 (-) 231 WP_003694609.1 hypothetical protein -
  NGFG_RS11530 (NGFG_00008) - 2120230..2120430 (-) 201 WP_002212530.1 hypothetical protein -
  NGFG_RS11535 (NGFG_00009) - 2120434..2120745 (-) 312 WP_003694611.1 hypothetical protein -
  NGFG_RS11540 (NGFG_00010) - 2120757..2121971 (-) 1215 WP_003694614.1 replication initiation factor domain-containing protein -
  NGFG_RS15340 - 2122673..2123038 (-) 366 Protein_2163 pilin -
  NGFG_RS16200 - 2123078..2123485 (-) 408 Protein_2164 pilin -
  NGFG_RS11555 (NGFG_02487) pilE 2123867..2124289 (-) 423 WP_080229175.1 pilin Machinery gene
  NGFG_RS14890 - 2124315..2124662 (-) 348 Protein_2166 pilin -
  NGFG_RS16205 - 2124702..2125046 (-) 345 Protein_2167 pilin -
  NGFG_RS16680 - 2125161..2125298 (-) 138 Protein_2168 pilin -
  NGFG_RS15345 - 2125672..2125803 (-) 132 WP_010356054.1 hypothetical protein -
  NGFG_RS11575 (NGFG_00016) - 2125885..2126573 (-) 689 Protein_2170 SprT family zinc-dependent metalloprotease -
  NGFG_RS11580 (NGFG_00017) - 2126570..2127313 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  NGFG_RS11585 (NGFG_00018) gmhB 2127343..2127906 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 14914.88 Da        Isoelectric Point: 10.0070

>NTDB_id=50836 NGFG_RS11555 WP_080229175.1 2123867..2124289(-) (pilE) [Neisseria gonorrhoeae MS11]
MSNTSKKSAVAGYCPNHGTWPKDNGDAGVASPADKIKGKYVQKVEVAKGVVTAEMASTGVNKEIKDKKLSLWAKRQDGSV
KWFCGQPVTRGAGNAGKADDVTKAGNDNEKINTKHLPSTCRDKSTAICIETPPTAFYKNT

Nucleotide


Download         Length: 423 bp        

>NTDB_id=50836 NGFG_RS11555 WP_080229175.1 2123867..2124289(-) (pilE) [Neisseria gonorrhoeae MS11]
ATTTCAAACACTTCCAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCACATGGCCGAAAGACAACGGTGATGC
CGGCGTGGCATCCCCCGCCGACAAAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCG
AAATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTA
AAATGGTTCTGCGGACAGCCGGTTACGCGCGGCGCCGGCAACGCCGGCAAAGCCGACGACGTCACCAAAGCCGGCAACGA
CAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCAACTGCCATTTGCATAGAAACACCACCTA
CGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.554

86.429

0.636
  pilE Neisseria gonorrhoeae MS11

61.667

85.714

0.529

Multiple sequence alignment