Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   MYY_RS07715 Genome accession   NC_017769
Coordinates   1478469..1479701 (-) Length   410 a.a.
NCBI ID   WP_000106341.1    Uniprot ID   A0A0T8BV24
Organism   Streptococcus pneumoniae ST556     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473469..1484701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYY_RS07685 (MYY_1496) - 1473656..1474624 (+) 969 WP_000081004.1 NAD(P)/FAD-dependent oxidoreductase -
  MYY_RS07690 (MYY_1497) whiA 1474658..1475569 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  MYY_RS07695 (MYY_1498) - 1475566..1476543 (-) 978 WP_001231086.1 YvcK family protein -
  MYY_RS07700 (MYY_1499) rapZ 1476540..1477430 (-) 891 WP_000163057.1 RNase adapter RapZ -
  MYY_RS07705 (MYY_1500) - 1477482..1477862 (-) 381 WP_001140420.1 RidA family protein -
  MYY_RS07710 (MYY_1501) yihA 1477873..1478460 (-) 588 WP_000422605.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  MYY_RS07715 (MYY_1502) clpX 1478469..1479701 (-) 1233 WP_000106341.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  MYY_RS07720 (MYY_1503) - 1479733..1479903 (-) 171 WP_000442276.1 hypothetical protein -
  MYY_RS07725 (MYY_1504) - 1479903..1480409 (-) 507 WP_000162444.1 dihydrofolate reductase -
  MYY_RS07730 (MYY_1505) - 1480539..1481057 (-) 519 WP_000229862.1 Dps family protein -
  MYY_RS07735 (MYY_1506) lytC 1481555..1483060 (-) 1506 WP_013193470.1 choline binding-anchored murein hydrolase LytC -
  MYY_RS07740 (MYY_1507) tpiA 1483098..1483856 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  MYY_RS07745 (MYY_1508) - 1483955..1484632 (-) 678 WP_000221584.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45740.27 Da        Isoelectric Point: 4.4550

>NTDB_id=50825 MYY_RS07715 WP_000106341.1 1478469..1479701(-) (clpX) [Streptococcus pneumoniae ST556]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=50825 MYY_RS07715 WP_000106341.1 1478469..1479701(-) (clpX) [Streptococcus pneumoniae ST556]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
CGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTACAACCACTACAAACGTATCAATTTCCACGATACGCGTGAAGAGTCGGAAGA
TGTGGATTTGCAGAAGTCAAATATCTTGATGATTGGCCCAACTGGTTCGGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCCATTGCGGATGCAACAGCTCTGACTGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATTGAGCGCGCAGAGCGTGGGATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAAAGCGAGAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGTGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCGCCTCAGGGGGGACGCAAGCATCCACAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTTATCGTGGGTGGTGCATTTGATGGCATCGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
TGGATTTGGTCAAAACAACAAGGCGATTGACGAAAATAGCTCCTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCAGCTCTTGAGCAATTGACTGTTGATGACCTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGTTATCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCCCTACAAGAGATTGCTAATAAAGCCATCGAACGAAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGACGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8BV24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment