Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   I3X05_RS17775 Genome accession   NZ_CP065218
Coordinates   225237..227282 (-) Length   681 a.a.
NCBI ID   WP_193157942.1    Uniprot ID   A0AAJ4IFN9
Organism   Vibrio navarrensis strain 20-VB00237     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 220237..232282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS17760 (I3X05_18090) - 221511..222467 (-) 957 WP_337971361.1 AEC family transporter -
  I3X05_RS17765 (I3X05_18095) ylqF 222802..223746 (+) 945 WP_045572154.1 ribosome biogenesis GTPase YlqF -
  I3X05_RS17770 (I3X05_18100) cqsA 224020..225198 (+) 1179 WP_045572153.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  I3X05_RS17775 (I3X05_18105) cqsS 225237..227282 (-) 2046 WP_193157942.1 hybrid sensor histidine kinase/response regulator Regulator
  I3X05_RS17780 (I3X05_18110) - 227559..228107 (-) 549 WP_045572151.1 GNAT family N-acetyltransferase -
  I3X05_RS17785 (I3X05_18115) - 228274..229398 (+) 1125 WP_193187271.1 fatty acid desaturase -
  I3X05_RS17790 (I3X05_18120) - 229459..230436 (-) 978 WP_045572291.1 chemotaxis protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78265.72 Da        Isoelectric Point: 6.5487

>NTDB_id=508221 I3X05_RS17775 WP_193157942.1 225237..227282(-) (cqsS) [Vibrio navarrensis strain 20-VB00237]
MESIRKVYQYANPNLTLVGWMGFLGFPTYYWVWTHLFPQSYENLPLRLLCSGLFLLLVLRERLPMPIRTRMPFVYLVVIT
TCLPFFFFFMLLMNEWSNVWVMSFMAAIFLHILLVHMTKVMFSQTFIGVGMAVLAAYVCNDYHLVISVDWRHVPIFLFIY
LFGNLFYFRNQVEHESRISIAKAFGAGIAHEMRNPLSGLVASIDVIQSVIPDDKVEKRSSYALSAKDVALLREVSEEAMK
IIHSGNETIDLLLTSIDENRVSRSTFKRHSANEVVKNAIESFSYKKAADRQCIRYHEEGQFEFFGSHTLLKYVIYNLVKN
AFNYRNPEVFSIDITISRDEAENMIIVRDNGQGIAPASMEHIFKDFYTTGKSGNYGLGLPFCKKVMRSFGGTIACQSEQG
QWTEFTLTFPLVKAKVVGEIKYELMKLKSVFFISEQEILCKKMVESARSSGFALTVKTAEQACLMAEHEFEYDLIFLDLS
SVDLKNSQLDKLESLLHFTEARIVYLYQDAIVNRRNQSTLPVLWVETQSWLLNTAQIIDRLMFDANFDAYMPAPVRKSDD
GKRVIMVVDDNDSLRKFTSLLLEKQGFEVIQREDGQEAIQALDKHHVDLILMDIEMPILDGIEASIQIRQSNQKYAHVPI
IAHTGDSTPVTLERINQSGMSDYLVKPADKNKLLDKISHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=508221 I3X05_RS17775 WP_193157942.1 225237..227282(-) (cqsS) [Vibrio navarrensis strain 20-VB00237]
ATGGAATCGATTCGCAAGGTTTATCAATACGCTAACCCTAACTTGACGCTTGTCGGCTGGATGGGTTTTCTCGGCTTTCC
GACCTACTACTGGGTTTGGACGCATCTTTTTCCTCAGTCTTACGAGAATCTGCCGCTTAGGCTACTCTGTTCAGGTTTGT
TCTTGCTGCTGGTTTTGCGAGAGCGGCTACCCATGCCGATCCGCACGCGTATGCCTTTCGTCTATTTAGTAGTGATAACG
ACCTGTTTGCCGTTTTTCTTCTTTTTTATGCTGTTGATGAATGAATGGTCGAACGTTTGGGTCATGTCCTTTATGGCAGC
GATTTTCTTACACATCTTGTTAGTGCATATGACTAAGGTGATGTTTAGTCAAACATTTATCGGTGTTGGCATGGCAGTAC
TTGCCGCGTATGTGTGCAATGACTACCATCTGGTGATTTCCGTCGACTGGCGTCATGTGCCGATATTTCTCTTTATCTAT
CTGTTTGGCAACCTATTCTATTTTCGCAATCAAGTTGAGCATGAATCACGGATCTCGATCGCCAAAGCGTTTGGTGCCGG
AATCGCCCATGAAATGCGTAACCCGCTGAGTGGCTTGGTTGCTTCTATCGATGTGATCCAATCGGTGATTCCCGACGATA
AAGTTGAGAAACGCAGTAGCTACGCGTTAAGTGCCAAAGATGTCGCTTTGTTACGCGAAGTGAGTGAAGAAGCGATGAAG
ATTATTCATTCGGGCAATGAGACGATTGATCTGCTTTTGACTTCGATTGATGAAAATCGTGTCTCTCGTTCAACCTTTAA
GCGGCATTCGGCCAATGAGGTGGTGAAAAACGCCATTGAGAGCTTTAGTTATAAAAAAGCGGCAGACAGGCAGTGCATTC
GCTACCACGAAGAAGGGCAGTTTGAATTTTTTGGTAGCCACACGCTACTTAAGTACGTCATCTATAACCTCGTCAAAAAT
GCGTTTAACTATCGCAATCCCGAGGTATTCAGCATAGATATTACGATAAGCCGCGATGAAGCAGAGAACATGATTATCGT
GCGAGACAACGGGCAGGGAATTGCGCCAGCCTCGATGGAACATATTTTCAAGGACTTCTATACCACAGGGAAAAGTGGCA
ACTATGGTTTAGGATTGCCTTTTTGTAAAAAGGTGATGCGATCCTTTGGTGGTACTATCGCTTGTCAATCGGAGCAAGGT
CAATGGACGGAGTTTACGCTGACCTTTCCGCTGGTGAAAGCTAAAGTAGTTGGTGAAATCAAGTATGAGCTGATGAAACT
CAAGTCGGTCTTTTTTATCAGTGAGCAAGAGATCCTGTGTAAAAAAATGGTGGAATCAGCCCGCTCAAGTGGTTTCGCTC
TCACGGTAAAAACAGCCGAGCAAGCATGTTTAATGGCCGAGCATGAGTTTGAATATGATCTCATTTTTCTTGATTTGAGC
TCGGTCGATTTAAAGAACAGCCAGCTAGACAAGCTAGAATCTTTATTGCATTTTACCGAAGCGCGCATTGTTTACTTGTA
TCAAGATGCGATAGTGAATCGCCGCAACCAAAGTACGTTGCCAGTATTGTGGGTGGAAACGCAATCTTGGTTACTCAATA
CAGCGCAGATTATCGATAGACTGATGTTTGACGCGAACTTTGATGCGTACATGCCCGCTCCGGTTAGAAAATCCGACGAT
GGCAAACGGGTGATTATGGTGGTTGATGATAATGATTCGCTGCGCAAATTCACCTCCTTGTTGTTGGAGAAACAGGGTTT
TGAAGTGATTCAAAGAGAAGATGGTCAGGAAGCGATTCAGGCGCTGGATAAACATCATGTTGATCTCATTTTGATGGATA
TTGAAATGCCGATATTAGACGGTATAGAAGCGTCAATTCAGATCCGTCAGTCAAATCAAAAATATGCCCATGTTCCAATT
ATTGCTCATACTGGTGACAGCACTCCTGTGACACTGGAGAGAATTAATCAGTCAGGTATGTCTGATTATTTAGTAAAACC
AGCCGATAAAAATAAGTTACTAGATAAAATTTCGCATTGGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.415

100

0.496