Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   I3X05_RS17770 Genome accession   NZ_CP065218
Coordinates   224020..225198 (+) Length   392 a.a.
NCBI ID   WP_045572153.1    Uniprot ID   A0A0F2HCJ9
Organism   Vibrio navarrensis strain 20-VB00237     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 219020..230198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS17760 (I3X05_18090) - 221511..222467 (-) 957 WP_337971361.1 AEC family transporter -
  I3X05_RS17765 (I3X05_18095) ylqF 222802..223746 (+) 945 WP_045572154.1 ribosome biogenesis GTPase YlqF -
  I3X05_RS17770 (I3X05_18100) cqsA 224020..225198 (+) 1179 WP_045572153.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  I3X05_RS17775 (I3X05_18105) cqsS 225237..227282 (-) 2046 WP_193157942.1 hybrid sensor histidine kinase/response regulator Regulator
  I3X05_RS17780 (I3X05_18110) - 227559..228107 (-) 549 WP_045572151.1 GNAT family N-acetyltransferase -
  I3X05_RS17785 (I3X05_18115) - 228274..229398 (+) 1125 WP_193187271.1 fatty acid desaturase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 43464.76 Da        Isoelectric Point: 6.4361

>NTDB_id=508220 I3X05_RS17770 WP_045572153.1 224020..225198(+) (cqsA) [Vibrio navarrensis strain 20-VB00237]
MNNMFPKQLPEFITNRLLFQVEDLIHSNKSKTHLVMGKSPESDSIIMQSNDYLSIANHPEIKQVHTDAINKCDASVVMSA
IFLQSEKSKPNFEKQLADYTGMSSCLLSQSGWAANVGLLQTICAPTTPVYIDFFTHMSLWEGARIADAAIHPFMHNNLNH
LIKQVERYGAGIIIVDSVYSTIGTVAPLKELCDIAERYGCAIIVDESHSLGTHGPQGAGLVKELELTDKVDFITVSLAKS
FAYRAGAILGHDLISQTLPFVAYPAIFSSALLPFEIDRLEKTLEIVRGSDEKRAQVVHLAKQLRLGLKQIGFQVRSQSQI
VAIETADERNTEHVRDYLEDNGIFGSVFCRPATGKNKNIIRFSINASLSEQDIEKTIAVCRSAYQSGQFIFV

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=508220 I3X05_RS17770 WP_045572153.1 224020..225198(+) (cqsA) [Vibrio navarrensis strain 20-VB00237]
ATGAATAACATGTTTCCCAAACAGTTACCTGAATTTATAACAAATCGCTTATTATTTCAGGTAGAAGACCTGATTCATAG
TAATAAGAGCAAAACACATTTAGTCATGGGCAAAAGCCCAGAAAGTGACTCGATCATCATGCAGAGCAATGATTATTTAT
CAATTGCTAATCATCCAGAAATCAAACAGGTTCATACTGATGCAATAAATAAGTGCGATGCCAGTGTTGTCATGTCGGCT
ATTTTTTTGCAAAGTGAAAAGAGCAAACCCAATTTTGAAAAGCAACTCGCCGACTACACTGGAATGTCATCTTGTTTGCT
GTCTCAATCAGGCTGGGCAGCCAATGTTGGTCTTTTGCAAACTATCTGTGCCCCGACAACCCCTGTCTACATTGACTTCT
TTACCCATATGTCACTTTGGGAAGGAGCACGTATCGCCGATGCGGCCATCCATCCTTTTATGCATAACAACCTCAATCAC
CTGATTAAGCAGGTTGAACGCTATGGTGCTGGGATCATCATTGTGGACTCTGTCTACAGCACGATTGGCACCGTCGCACC
ACTAAAAGAGCTATGTGACATCGCCGAACGATATGGGTGCGCCATTATTGTCGATGAGTCTCACTCGTTGGGAACACACG
GCCCACAAGGCGCGGGATTGGTCAAAGAGTTAGAGTTGACTGATAAAGTTGACTTTATTACTGTCAGCCTAGCCAAGTCG
TTTGCTTATCGGGCCGGAGCCATTCTTGGCCACGATCTCATTTCACAAACTCTGCCGTTTGTTGCCTACCCGGCGATATT
CAGTTCTGCTTTGCTGCCATTCGAAATCGACAGATTAGAGAAAACACTGGAGATTGTTCGAGGAAGTGATGAAAAAAGAG
CACAAGTCGTGCACTTGGCAAAACAGCTGCGTCTAGGGCTCAAGCAAATCGGTTTTCAGGTTCGCAGCCAATCTCAAATT
GTCGCCATTGAAACGGCCGATGAGCGTAATACCGAGCATGTGCGAGACTATTTAGAGGATAATGGTATTTTTGGCTCGGT
ATTTTGTCGTCCAGCAACGGGGAAAAATAAGAATATCATCCGGTTTTCTATTAACGCATCGCTTAGCGAGCAAGATATAG
AAAAAACAATAGCAGTATGCCGCTCGGCTTATCAATCTGGACAATTTATTTTTGTTTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HCJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.99

98.98

0.574