Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   I3X05_RS13605 Genome accession   NZ_CP065217
Coordinates   2901986..2902600 (+) Length   204 a.a.
NCBI ID   WP_045571197.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 20-VB00237     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896986..2907600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS13585 (I3X05_13930) - 2897306..2898229 (-) 924 WP_045571194.1 ABC transporter ATP-binding protein -
  I3X05_RS13590 (I3X05_13935) - 2898382..2900040 (-) 1659 WP_337970798.1 SulP family inorganic anion transporter -
  I3X05_RS13595 (I3X05_13940) can 2900278..2900946 (+) 669 WP_045571196.1 carbonate dehydratase -
  I3X05_RS13600 (I3X05_13945) hpt 2901065..2901595 (-) 531 WP_039430440.1 hypoxanthine phosphoribosyltransferase -
  I3X05_RS13605 (I3X05_13950) opaR 2901986..2902600 (+) 615 WP_045571197.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  I3X05_RS13610 (I3X05_13955) lpdA 2902778..2904205 (-) 1428 WP_045571198.1 dihydrolipoyl dehydrogenase -
  I3X05_RS13615 (I3X05_13960) aceF 2904461..2906362 (-) 1902 WP_337970799.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23519.94 Da        Isoelectric Point: 6.3361

>NTDB_id=508201 I3X05_RS13605 WP_045571197.1 2901986..2902600(+) (opaR) [Vibrio navarrensis strain 20-VB00237]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAQDNLKNITNAMIELVTQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVRAIERGEVCDKHSPE
DLANMFLGICYSLFVQANRAKSEAELTKLVNSYLQMLCIYKGEN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=508201 I3X05_RS13605 WP_045571197.1 2901986..2902600(+) (opaR) [Vibrio navarrensis strain 20-VB00237]
ATGGACTCAATAGCAAAGAGACCTCGAACTCGTTTATCTCCACTGAAACGTAAACAACAACTGATGGAAATCGCACTGGA
AGTGTTTGCTCGTCGTGGCATCGGCCGCGGTGGTCACGCAGATATCGCCGAGATTGCACAGGTTTCTGTCGCCACCGTGT
TTAACTATTTCCCGACACGTGAAGATCTGGTTGATGAGGTACTCAATCATGTCGTTCGTCAGTTCTCTAATTTCCTGTCG
GATAACATTGATCTCGACATTCACGCGCAAGATAACCTCAAAAACATCACCAACGCGATGATTGAACTGGTGACTCAAGA
CTGTCATTGGCTCAAAGTGTGGTTTGAATGGAGCGCATCAACGCGTGATGAAGTATGGCCACTATTTGTCACCACCAACC
GCACTAATCAACTGCTGGTACAGAACATGTTTGTTCGTGCCATCGAGCGTGGCGAGGTGTGTGACAAACACAGCCCAGAA
GATCTGGCGAATATGTTCCTCGGCATCTGCTACTCACTGTTTGTGCAAGCCAATCGTGCCAAGAGTGAAGCGGAACTGAC
AAAACTCGTCAACAGCTACCTGCAAATGCTTTGCATTTATAAGGGTGAGAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

88.235

100

0.882
  hapR Vibrio cholerae C6706

71.859

97.549

0.701
  hapR Vibrio cholerae strain A1552

71.859

97.549

0.701